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cheatsheet-tldr/tldr/pangolin
2024-12-27 00:17:30 +00:00

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---
syntax: markdown
tags: [tldr, common]
source: https://github.com/tldr-pages/tldr.git
---
# pangolin
> Implements the dynamic nomenclature of SARS-CoV-2 lineages (Pango nomenclature).
> More information: <https://cov-lineages.org/resources/pangolin/usage.html>.
- Run `pangolin` on the specified FASTA file:
`pangolin {{path/to/file.fa}}`
- Use the specified analysis engine:
`pangolin --analysis-mode {{accurate|fast|pangolearn|usher}}`