fix(common): validate log level after error function (#133)

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
Signed-off-by: Ismo Vuorinen <ismo@ivuorinen.net>

.claude/agents/code-reviewer.md

@@ -1,14 +0,0 @@
----
-name: code-reviewer
-description: Reviews shell/fish/lua changes for correctness and style
-tools: [Read, Grep, Glob, Bash]
----
-
-Review the changed files for:
-
-1. **Shell scripts**: POSIX compliance for /bin/sh scripts, proper quoting, shellcheck issues
-2. **Fish files**: fish syntax correctness, consistent function patterns
-3. **Lua files**: stylua compliance, Neovim API usage patterns
-4. **All**: EditorConfig compliance (2-space indent, LF endings)
-
-Report only high-confidence issues. Skip vendor files (fzf-tmux).

.claude/hooks/async-bats.sh

@@ -1,13 +0,0 @@
-#!/usr/bin/env bash
-# Async Bats runner: run matching test file when a script is edited.
-# Runs in background (async: true) — output appears on next turn.
-
-fp=$(jq -r '.tool_input.file_path // empty')
-[ -z "$fp" ] && exit 0
-
-name=$(basename "$fp")
-test_file="$CLAUDE_PROJECT_DIR/tests/${name}.bats"
-[ ! -f "$test_file" ] && exit 0
-
-echo "Running $test_file ..."
-"$CLAUDE_PROJECT_DIR/node_modules/.bin/bats" "$test_file"

.claude/hooks/log-failures.sh

@@ -1,14 +0,0 @@
-#!/usr/bin/env bash
-# PostToolUseFailure logger: append tool failures to a local log file.
-
-log_file="$CLAUDE_PROJECT_DIR/.claude/hook-failures.log"
-
-entry=$(jq -c '{
-  time: (now | strftime("%Y-%m-%dT%H:%M:%SZ")),
-  tool: .tool_name,
-  error: .error
-}')
-
-echo "$entry" >> "$log_file"
-
-exit 0

.claude/hooks/notify-idle.sh

@@ -1,13 +0,0 @@
-#!/usr/bin/env bash
-# Notification hook: alert when Claude goes idle.
-# Uses pushover if available, falls back to macOS native notification.
-
-msg=$(jq -r '.message // "Claude is waiting for input"')
-
-if command -v pushover > /dev/null; then
-  pushover "Claude Code" "$msg"
-elif command -v osascript > /dev/null; then
-  osascript -e "display notification \"$msg\" with title \"Claude Code\""
-fi
-
-exit 0

.claude/hooks/post-edit-config-warn.sh

@@ -1,15 +0,0 @@
-#!/usr/bin/env bash
-# Post-edit: warn when formatter/linter configs are changed,
-# since they affect the entire repo's code style.
-
-fp=$(jq -r '.tool_input.file_path // empty')
-[ -z "$fp" ] || [ ! -f "$fp" ] && exit 0
-
-case "$(basename "$fp")" in
-  .editorconfig | biome.json | .prettierrc.json | .shellcheckrc | stylua.toml | .yamllint.yml)
-    echo "NOTE: Formatter/linter config changed ($fp)." >&2
-    echo "Run 'pre-commit run --all-files' to verify consistency." >&2
-    ;;
-esac
-
-exit 0

.claude/hooks/post-edit-dotbot-validate.sh

@@ -1,28 +0,0 @@
-#!/usr/bin/env bash
-# Post-edit: validate Dotbot install.conf.yaml files after editing.
-# Checks YAML syntax and verifies link targets exist.
-
-fp=$(jq -r '.tool_input.file_path // empty')
-[ -z "$fp" ] || [ ! -f "$fp" ] && exit 0
-
-case "$fp" in
-  *install.conf.yaml) ;;
-  *) exit 0 ;;
-esac
-
-# YAML syntax check
-if command -v yamllint > /dev/null; then
-  if ! output=$(yamllint -d relaxed "$fp" 2>&1); then
-    echo "Dotbot config YAML error in $fp:" >&2
-    echo "$output" >&2
-    exit 2
-  fi
-elif command -v python3 > /dev/null; then
-  if ! output=$(python3 -c "import yaml; yaml.safe_load(open('$fp'))" 2>&1); then
-    echo "Dotbot config YAML parse error in $fp:" >&2
-    echo "$output" >&2
-    exit 2
-  fi
-fi
-
-exit 0

.claude/hooks/post-edit-format.sh

@@ -1,30 +0,0 @@
-#!/usr/bin/env bash
-# Post-edit formatter: auto-format file based on extension.
-# Receives tool output JSON on stdin.
-
-fp=$(jq -r '.tool_input.file_path // empty')
-[ -z "$fp" ] || [ ! -f "$fp" ] && exit 0
-
-case "$fp" in
-  *.sh | */bin/*)
-    head -1 "$fp" | grep -qE '^#!.*(ba)?sh' \
-      && command -v shfmt > /dev/null \
-      && shfmt -i 2 -bn -ci -sr -fn -w "$fp"
-    ;;
-  *.fish)
-    command -v fish_indent > /dev/null && fish_indent -w "$fp"
-    ;;
-  *.lua)
-    command -v stylua > /dev/null && stylua "$fp"
-    ;;
-  *.md)
-    command -v biome > /dev/null && biome format --write "$fp" 2> /dev/null
-    command -v markdown-table-formatter > /dev/null \
-      && markdown-table-formatter "$fp" 2> /dev/null
-    ;;
-  *.yml | *.yaml)
-    command -v prettier > /dev/null && prettier --write "$fp" 2> /dev/null
-    ;;
-esac
-
-exit 0

.claude/hooks/pre-edit-block.sh

@@ -1,35 +0,0 @@
-#!/usr/bin/env bash
-# Pre-edit guard: block vendor/lock files and secrets.d real fish files.
-# Receives tool input JSON on stdin.
-
-fp=$(jq -r '.tool_input.file_path // empty')
-[ -z "$fp" ] && exit 0
-
-case "$fp" in
-  */fzf-tmux | */yarn.lock | */.yarn/*)
-    echo "BLOCKED: $fp is a vendor/lock file — do not edit directly" >&2
-    exit 2
-    ;;
-  */tools/dotbot/* | */tools/dotbot-include/* | */tools/antidote/*)
-    echo "BLOCKED: $fp is inside a git submodule — do not edit" >&2
-    exit 2
-    ;;
-  */config/tmux/plugins/*)
-    echo "BLOCKED: $fp is a tmux plugin submodule — do not edit" >&2
-    exit 2
-    ;;
-  */config/cheat/cheatsheets/community/* | */config/cheat/cheatsheets/tldr/*)
-    echo "BLOCKED: $fp is a cheat submodule — do not edit" >&2
-    exit 2
-    ;;
-  */secrets.d/*.fish)
-    case "$(basename "$fp")" in
-      *.example.fish | *.fish.example) exit 0 ;;
-    esac
-    echo "BLOCKED: do not edit $fp directly — it is gitignored." >&2
-    echo "Copy the matching .fish.example file and edit that locally." >&2
-    exit 2
-    ;;
-esac
-
-exit 0

.claude/hooks/session-start-context.sh

@@ -1,15 +0,0 @@
-#!/usr/bin/env bash
-# SessionStart context: print branch, dirty file count, and last commit.
-
-cd "$CLAUDE_PROJECT_DIR" || exit 0
-
-branch=$(git branch --show-current 2> /dev/null)
-dirty=$(git status --short 2> /dev/null | wc -l | tr -d ' ')
-last=$(git log -1 --oneline 2> /dev/null)
-
-echo "=== Dotfiles session context ==="
-echo "Branch : ${branch:-unknown}"
-echo "Dirty  : ${dirty} file(s)"
-echo "Last   : ${last}"
-
-exit 0

.claude/hooks/stop-lint-gate.sh

@@ -1,16 +0,0 @@
-#!/usr/bin/env bash
-# Stop gate: run yarn lint before Claude finishes.
-# Exit 2 sends feedback back and keeps Claude working.
-
-cd "$CLAUDE_PROJECT_DIR" || exit 0
-
-output=$(yarn lint 2>&1)
-status=$?
-
-if [ $status -ne 0 ]; then
-  echo "Lint failed — fix before finishing:" >&2
-  echo "$output" >&2
-  exit 2
-fi
-
-exit 0

.claude/settings.json

@@ -1,87 +0,0 @@
-{
-  "hooks": {
-    "SessionStart": [
-      {
-        "hooks": [
-          {
-            "type": "command",
-            "command": "\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/session-start-context.sh",
-            "statusMessage": "Loading project context..."
-          }
-        ]
-      }
-    ],
-    "PreToolUse": [
-      {
-        "matcher": "Edit|Write",
-        "hooks": [
-          {
-            "type": "command",
-            "command": "\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/pre-edit-block.sh"
-          }
-        ]
-      }
-    ],
-    "PostToolUse": [
-      {
-        "matcher": "Edit|Write",
-        "hooks": [
-          {
-            "type": "command",
-            "command": "\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/post-edit-format.sh",
-            "statusMessage": "Formatting..."
-          },
-          {
-            "type": "command",
-            "command": "\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/post-edit-dotbot-validate.sh",
-            "statusMessage": "Validating Dotbot config..."
-          },
-          {
-            "type": "command",
-            "command": "\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/post-edit-config-warn.sh"
-          },
-          {
-            "type": "command",
-            "command": "\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/async-bats.sh",
-            "async": true,
-            "statusMessage": "Running tests..."
-          }
-        ]
-      }
-    ],
-    "PostToolUseFailure": [
-      {
-        "hooks": [
-          {
-            "type": "command",
-            "command": "\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/log-failures.sh",
-            "async": true
-          }
-        ]
-      }
-    ],
-    "Notification": [
-      {
-        "matcher": "idle_prompt",
-        "hooks": [
-          {
-            "type": "command",
-            "command": "\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/notify-idle.sh",
-            "async": true
-          }
-        ]
-      }
-    ],
-    "Stop": [
-      {
-        "hooks": [
-          {
-            "type": "command",
-            "command": "\"$CLAUDE_PROJECT_DIR\"/.claude/hooks/stop-lint-gate.sh",
-            "statusMessage": "Running lint gate..."
-          }
-        ]
-      }
-    ]
-  }
-}

.claude/skills/dotbot-validate/SKILL.md

@@ -1,38 +0,0 @@
----
-name: dotbot-validate
-description: >-
-  Validate Dotbot install.conf.yaml files after editing.
-  Apply when writing or modifying any install.conf.yaml.
-user-invocable: false
-allowed-tools: Bash, Read
----
-
-After editing any `install.conf.yaml` file, validate it:
-
-## 1. YAML syntax
-
-```bash
-yamllint -d relaxed <file>
-```
-
-If yamllint is not available, fall back to:
-
-```bash
-python3 -c "import yaml; yaml.safe_load(open('<file>'))"
-```
-
-## 2. Link target verification
-
-For each `link` entry, verify the source path exists relative
-to the repo root. Report any missing source files.
-
-## 3. Host-specific configs
-
-Files in `hosts/<hostname>/install.conf.yaml` overlay the
-global config. Verify that any `include` directives reference
-existing files.
-
-## Key locations
-
-- `install.conf.yaml` — global config
-- `hosts/*/install.conf.yaml` — per-host overlays

.claude/skills/fish-validate/SKILL.md

@@ -1,38 +0,0 @@
----
-name: fish-validate
-description: >-
-  Validate fish scripts after editing.
-  Apply when writing or modifying any .fish file
-  in config/fish/.
-user-invocable: false
-allowed-tools: Bash, Read
----
-
-After editing any `.fish` file in `config/fish/`, validate it:
-
-## 1. Syntax check
-
-```bash
-fish --no-execute <file>
-```
-
-If syntax check fails, fix the issue before proceeding.
-
-## 2. Format check
-
-Run `fish_indent` to verify formatting:
-
-```bash
-fish_indent --check <file>
-```
-
-If formatting differs, apply it:
-
-```bash
-fish_indent -w <file>
-```
-
-## Key files to never validate
-
-- Files inside `config/fish/functions/` prefixed with `_tide_`
-  (managed by the tide prompt plugin)

.claude/skills/host-override/SKILL.md

@@ -1,58 +0,0 @@
----
-name: host-override
-description: >-
-  Create or extend host-specific config overlays
-  in hosts/<hostname>/ for machine-specific settings.
-user-invocable: true
-allowed-tools: Bash, Read, Write, Edit
----
-
-When creating host-specific configuration overrides:
-
-## 1. Determine hostname
-
-```bash
-hostname -s
-```
-
-## 2. Directory structure
-
-Host overrides live in `hosts/<hostname>/` mirroring the
-global layout:
-
-```
-hosts/<hostname>/
-  base/           -> ~/.*
-  config/         -> ~/.config/
-  install.conf.yaml
-```
-
-## 3. Create install.conf.yaml
-
-If it doesn't exist, create `hosts/<hostname>/install.conf.yaml`
-following the Dotbot format. Use `include` to layer on top of
-the global config:
-
-```yaml
-- defaults:
-    link:
-      create: true
-      relink: true
-      force: true
-```
-
-## 4. Git config overrides
-
-The most common override is `hosts/<hostname>/config/git/overrides/config`.
-This is where host-specific git user, signing keys, and credential
-helpers go. Always `[include]` the shared config:
-
-```ini
-[include]
-  path = ~/.dotfiles/config/git/shared
-```
-
-## 5. Test
-
-Run `./install` to apply. Dotbot processes
-`hosts/<hostname>/install.conf.yaml` after the global config.

.claude/skills/lua-format/SKILL.md

@@ -1,22 +0,0 @@
----
-name: lua-format
-description: >-
-  Format Lua files after editing.
-  Apply when writing or modifying any .lua file.
-user-invocable: false
-allowed-tools: Bash
----
-
-After editing any `.lua` file, format it with stylua:
-
-```bash
-stylua <file>
-```
-
-Project settings are in `stylua.toml` (90-char line length).
-
-If stylua is not available, skip formatting silently.
-
-## Files to never format
-
-- Files inside `config/nvim/` managed by plugins (lazy.nvim lockfile)

.claude/skills/new-fish-function/SKILL.md

@@ -1,40 +0,0 @@
----
-name: new-fish-function
-description: >-
-  Scaffold a new fish function in config/fish/functions/
-  with proper conventions and event handling.
-user-invocable: true
-allowed-tools: Bash, Read, Write, Edit
----
-
-When creating a new fish function in `config/fish/functions/`:
-
-## 1. Create the function file
-
-Create `config/fish/functions/<name>.fish`:
-
-```fish
-function <name> --description '<one-line description>'
-  # Function logic here
-end
-```
-
-- One function per file, filename must match function name
-- Always include `--description`
-- Use `--argument-names` for named parameters
-
-## 2. Conventions
-
-- Do NOT use `_tide_` prefix (reserved for tide prompt plugin)
-- Use `--wraps` if the function wraps an existing command
-- For abbreviation-like functions, prefer fish abbreviations
-  in `config/fish/alias.fish` instead
-
-## 3. Validate
-
-Run the fish-validate skill checks:
-
-```bash
-fish --no-execute config/fish/functions/<name>.fish
-fish_indent --check config/fish/functions/<name>.fish
-```

.claude/skills/new-script/SKILL.md

@@ -1,53 +0,0 @@
----
-name: new-script
-description: >-
-  Scaffold a new helper script in local/bin/ with proper
-  boilerplate, msgr sourcing, and documentation tag.
-user-invocable: true
-allowed-tools: Bash, Read, Write, Edit
----
-
-When creating a new script in `local/bin/`, follow this template:
-
-## 1. Script file
-
-Create `local/bin/<name>` with:
-
-```bash
-#!/usr/bin/env bash
-# @description <one-line description>
-
-set -euo pipefail
-
-# shellcheck source=msgr
-. "$(dirname "$0")/msgr"
-
-# Script logic here
-```
-
-- Use `msgr` functions for output: `msgr msg`, `msgr run`,
-  `msgr yay`, `msgr err`, `msgr warn`
-- The `@description` tag is required — `dfm scripts` discovers
-  scripts by it
-- POSIX scripts (`/bin/sh`) should NOT source msgr
-
-## 2. Make executable
-
-```bash
-chmod +x local/bin/<name>
-```
-
-## 3. Generate docs
-
-Run `dfm docs script <name>` or manually create `local/bin/<name>.md`
-with a usage summary.
-
-## 4. Validate
-
-Run the shell-validate skill checks (syntax + shellcheck).
-
-## Naming conventions
-
-- `x-` prefix for standalone utilities (e.g., `x-ssl-expiry-date`)
-- Short names for frequently used commands (e.g., `a`, `ad`, `ae`)
-- `git-` prefix for git subcommands (e.g., `git-dirty`)

.claude/skills/shell-validate/SKILL.md

@@ -1,44 +0,0 @@
----
-name: shell-validate
-description: >-
-  Validate shell scripts after editing.
-  Apply when writing or modifying any shell script
-  in local/bin/ or scripts/.
-user-invocable: false
-allowed-tools: Bash, Read, Grep
----
-
-After editing any shell script in `local/bin/`, `scripts/`, or `config/`
-(files with a `#!` shebang or `# shellcheck shell=` directive),
-validate it:
-
-## 1. Determine the shell
-
-- `/bin/sh` or `#!/usr/bin/env sh` shebang -> POSIX, use `sh -n`
-- `/bin/bash` or `#!/usr/bin/env bash` shebang -> Bash, use `bash -n`
-- `# shellcheck shell=bash` directive (no shebang) -> use `bash -n`
-- `# shellcheck shell=sh` directive (no shebang) -> use `sh -n`
-- No shebang and no directive -> default to `bash -n`
-
-## 2. Syntax check
-
-Run the appropriate syntax checker:
-
-```bash
-bash -n <file>   # for bash scripts
-sh -n <file>     # for POSIX sh scripts
-```
-
-If syntax check fails, fix the issue before proceeding.
-
-## 3. ShellCheck
-
-Run `shellcheck <file>`. The project `.shellcheckrc` already
-disables SC2039, SC2166, SC2154, SC1091, SC2174, SC2016.
-Only report and fix warnings that are NOT in that exclude list.
-
-## Key files to never validate (not shell scripts)
-
-- `local/bin/fzf-tmux` (vendor file)
-- `*.md` files
-- `*.bats` test files (Bats, not plain shell)

.claude/skills/yaml-validate/SKILL.md

@@ -1,38 +0,0 @@
----
-name: yaml-validate
-description: >-
-  Validate YAML files after editing.
-  Apply when writing or modifying any .yml or .yaml file.
-user-invocable: false
-allowed-tools: Bash, Read
----
-
-After editing any YAML file, validate it:
-
-## 1. Syntax check
-
-Run yamllint on the file:
-
-```bash
-yamllint <file>
-```
-
-If yamllint is not available, fall back to:
-
-```bash
-python3 -c "import yaml; yaml.safe_load(open('<file>'))"
-```
-
-## 2. GitHub Actions workflows
-
-If the file is under `.github/workflows/`, also run:
-
-```bash
-actionlint <file>
-```
-
-If actionlint is not available, skip silently.
-
-## Files to skip
-
-- `config/gh/hosts.yml` — managed by `gh` CLI, not hand-edited

.ecrc

@@ -0,0 +1,19 @@
+{
+  "Version": "2.7.0",
+  "Verbose": false,
+  "Debug": false,
+  "IgnoreDefaults": false,
+  "SpacesAftertabs": false,
+  "NoColor": false,
+  "Exclude": [],
+  "AllowedContentTypes": [],
+  "PassedFiles": [],
+  "Disable": {
+    "EndOfLine": false,
+    "Indentation": false,
+    "InsertFinalNewline": false,
+    "TrimTrailingWhitespace": false,
+    "IndentSize": false,
+    "MaxLineLength": false
+  }
+}

.editorconfig

@@ -8,16 +8,11 @@ indent_style = space
 insert_final_newline = true
 trim_trailing_whitespace = true
 
-[*.py]
-indent_size = 4
-max_line_length = 120
-
 [*.fish]
-max_line_length = 120
+max_line_length = 80
 
 [*.md]
-max_line_length = 120
-trim_trailing_whitespace = false
+max_line_length = 100
 
 [*.lua]
 max_line_length = 90
@@ -29,7 +24,11 @@ indent_size = 4
 indent_style = tab
 indent_size = 1
 
-[{local/bin/*,**/*.sh,**/zshrc,config/*,scripts/*}]
+[*.plist]
+indent_size = 1
+indent_style = tab
+
+[{local/bin/*,local/dfm/*,**/*.sh,**/zshrc,config/*,scripts/*}]
 indent_size        = 2
 tab_width          = 2
 shell_variant      = bash # --language-variant
@@ -39,20 +38,9 @@ space_redirects    = true
 keep_padding       = false
 function_next_line = true # --func-next-line
 
-[{*.plist,config/git/**,**/config/git/**}]
-indent_size = 1
-indent_style = tab
-
 # Ignore the entire "third_party" directory when calling shfmt on directories,
 # such as "shfmt -l -w .". When formatting files directly,
 # like "shfmt -w third_party/foo.sh" or "shfmt --filename=third_party/foo.sh",
 # the ignore logic is applied only when the --apply-ignore flag is given.
 [{tools/**,local/bin/asdf/**,config/cheat/cheatsheets/**,config/tmux/plugins/**}]
 ignore = true
-
-[plan]
-trim_trailing_whitespace = false
-max_line_length = off
-
-[base/hammerspoon/hammerspoon.types.lua]
-max_line_length = off

.editorconfig-checker.json

@@ -1,30 +0,0 @@
-{
-  "Verbose": false,
-  "Debug": false,
-  "IgnoreDefaults": false,
-  "SpacesAfterTabs": false,
-  "NoColor": false,
-  "Exclude": [
-    "base/plan",
-    "config/fish/completions/.*",
-    "config/karabiner/.*",
-    "config/fish/conf.d/.*",
-    "config/fish/functions/.*",
-    "config/fzf/key-bindings.fish",
-    "config/irssi/scripts/autorun/.*",
-    "config/vim/autoload/.*",
-    "docs/.*",
-    "local/man/.*",
-    "local/share/.*"
-  ],
-  "AllowedContentTypes": [],
-  "PassedFiles": [],
-  "Disable": {
-    "EndOfLine": false,
-    "Indentation": false,
-    "InsertFinalNewline": false,
-    "TrimTrailingWhitespace": false,
-    "IndentSize": false,
-    "MaxLineLength": false
-  }
-}

.envrc

@@ -0,0 +1 @@
+use asdf

.eslintrc.json

@@ -0,0 +1,3 @@
+{
+  "extends": ["@ivuorinen"]
+}

.gitattributes

@@ -85,7 +85,6 @@ LICENSE           text
 NEWS              text
 readme            text
 *README*          text
-# Files literally named "TODO", not a todo list item
 TODO              text
 
 # Templates
@@ -123,8 +122,7 @@ package.json      text eol=lf
 package-lock.json text eol=lf -diff
 pnpm-lock.yaml    text eol=lf -diff
 .prettierrc       text
-# Ensure yarn.lock shows textual diffs
-yarn.lock         text eol=lf
+yarn.lock         text -diff
 *.toml            text
 *.yaml            text
 *.yml             text
@@ -253,4 +251,3 @@ install              text eol=lf diff=shell
 *.snippets           text eol=lf
 *.theme              text eol=lf
 *.yamlfmt            text eol=lf
-*.bats              text eol=lf diff=shell

.github/CODE_OF_CONDUCT.md

@@ -60,7 +60,7 @@ representative at an online or offline event.
 
 Instances of abusive, harassing, or otherwise unacceptable behavior may be
 reported to the community leaders responsible for enforcement at
-<ismo@ivuorinen.net>.
+ismo@ivuorinen.net.
 All complaints will be reviewed and investigated promptly and fairly.
 
 All community leaders are obligated to respect the privacy and security of the
@@ -116,7 +116,7 @@ the community.
 
 This Code of Conduct is adapted from the [Contributor Covenant][homepage],
 version 2.0, available at
-<https://www.contributor-covenant.org/version/2/0/code_of_conduct.html>.
+https://www.contributor-covenant.org/version/2/0/code_of_conduct.html.
 
 Community Impact Guidelines were inspired by [Mozilla's code of conduct
 enforcement ladder](https://github.com/mozilla/diversity).
@@ -124,5 +124,5 @@ enforcement ladder](https://github.com/mozilla/diversity).
 [homepage]: https://www.contributor-covenant.org
 
 For answers to common questions about this code of conduct, see the FAQ at
-<https://www.contributor-covenant.org/faq>. Translations are available at
-<https://www.contributor-covenant.org/translations>.
+https://www.contributor-covenant.org/faq. Translations are available at
+https://www.contributor-covenant.org/translations.

.github/README.md

@@ -16,9 +16,11 @@ see what interesting stuff you've done with it. Sharing is caring.
 ### First time setup
 
 1. Clone this repository to `$HOME/.dotfiles`
-2. `./install`
-3. ???
-4. Profit
+2. Install [shellcheck](https://github.com/koalaman/shellcheck) and [pre-commit](https://pre-commit.com/)
+3. Run `pre-commit install` to enable Git hooks
+4. `./install`
+5. ???
+6. Profit
 
 ### Updates
 
@@ -37,22 +39,16 @@ see what interesting stuff you've done with it. Sharing is caring.
 ### Interesting folders
 
 | Path                | Description                                  |
-|---------------------|----------------------------------------------|
+| ------------------- | -------------------------------------------- |
 | `.github`           | GitHub Repository configuration files, meta. |
 | `hosts/{hostname}/` | Configs that should apply to that host only. |
 | `local/bin`         | Helper scripts that I've collected or wrote. |
 | `scripts`           | Setup scripts.                               |
 
-### Host specific configuration
-
-Configurations under `hosts/<hostname>` are applied only when running on the
-matching machine. Each host folder contains its own `install.conf.yaml` that
-is processed by Dotbot during installation.
-
 ### dotfile folders
 
 | Repo      | Destination | Description                                 |
-|-----------|-------------|---------------------------------------------|
+| --------- | ----------- | ------------------------------------------- |
 | `base/`   | `.*`        | `$HOME` level files.                        |
 | `config/` | `.config/`  | Configurations for applications.            |
 | `local/`  | `.local/`   | XDG Base folder: `bin`, `share` and `state` |
@@ -64,21 +60,6 @@ is processed by Dotbot during installation.
 
 Running `dfm` gives you a list of available commands.
 
-#### Documentation generation
-
-`dfm docs` generates Markdown documentation under the `docs/` directory. The
-subcommands are:
-
-```bash
-dfm docs alias        # regenerate alias table
-dfm docs folders      # document interesting folders
-dfm docs keybindings  # update keybinding docs for tmux, nvim and others
-dfm docs all          # run every docs task
-```
-
-The `docs/` folder contains generated cheat sheets, keybindings and other
-reference files. New documentation can be added without modifying this README.
-
 ## Configuration
 
 The folder structure follows [XDG Base Directory Specification][xdg] where possible.
@@ -86,7 +67,7 @@ The folder structure follows [XDG Base Directory Specification][xdg] where possi
 ### XDG Variables
 
 | Env                | Default              | Short description                              |
-|--------------------|----------------------|------------------------------------------------|
+| ------------------ | -------------------- | ---------------------------------------------- |
 | `$XDG_BIN_HOME`    | `$HOME/.local/bin`   | Local binaries                                 |
 | `$XDG_CONFIG_HOME` | `$HOME/.config`      | User-specific configs                          |
 | `$XDG_DATA_HOME`   | `$HOME/.local/share` | User-specific data files                       |
@@ -94,31 +75,6 @@ The folder structure follows [XDG Base Directory Specification][xdg] where possi
 
 Please see [docs/folders.md][docs-folders] for more information.
 
-## Managing submodules
-
-This repository uses Git submodules for external dependencies. After cloning,
-run:
-
-```bash
-git submodule update --init --recursive
-```
-
-To pull submodule updates later use:
-
-```bash
-git submodule update --remote --merge
-```
-
-The helper script `add-submodules.sh` documents how each submodule is added and
-configured. Submodules are automatically updated by the
-[update-submodules.yml](.github/workflows/update-submodules.yml) workflow.
-
-## Testing
-
-Shell scripts under `local/bin` are validated with [Bats](https://github.com/bats-core/bats-core).
-Run `yarn test` to execute every test file. Bats is installed as a development
-dependency, so run `yarn install` first if needed.
-
 [dfm]: https://github.com/ivuorinen/dotfiles/blob/main/local/bin/dfm
 [docs-folders]: https://github.com/ivuorinen/dotfiles/blob/main/docs/folders.md
 [xdg]: https://specifications.freedesktop.org/basedir-spec/basedir-spec-latest.html

.github/dependabot.yml

@@ -0,0 +1,7 @@
+version: 2
+updates:
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: 'github-actions'
+    directory: '/'
+    schedule:
+      interval: 'weekly'

.github/tag-changelog-config.js

@@ -16,10 +16,10 @@ module.exports = {
 
   excludeTypes: [],
 
-  renderTypeSection: (label, commits) => {
+  renderTypeSection: function (label, commits) {
     let text = `\n## ${label}\n\n`
 
-    commits.forEach((commit) => {
+    commits.forEach(commit => {
       const scope = commit.scope ? `**${commit.scope}:** ` : ''
       text += `- ${scope}${commit.subject}\n`
     })
@@ -27,10 +27,10 @@ module.exports = {
     return text
   },
 
-  renderChangelog: (release, changes) => {
+  renderChangelog: function (release, changes) {
     const now = new Date()
     const d = now.toISOString().substring(0, 10)
     const header = `# ${release} - ${d}\n`
-    return `${header}${changes}\n\n`
+    return header + changes + '\n\n'
   },
 }

.github/workflows/changelog.yml

@@ -9,27 +9,25 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-permissions:
-  contents: read
+permissions: read-all
 
 jobs:
   debug-changelog:
-    runs-on: ubuntu-latest
+    runs-on: self-hosted
 
-    permissions:
-      contents: read
+    permissions: write-all
 
     steps:
-      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
 
       - name: Create changelog text
         id: changelog
-        uses: loopwerk/tag-changelog@8dd150d55fbf1fe93e0ea00a29a6153aaeb81912 # v1.5.0
+        uses: loopwerk/tag-changelog@941366edb8920e2071eae0449031830984b9f26e # v1.3.0
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
           config_file: .github/tag-changelog-config.js
 
-      - name: "Echo results"
+      - name: 'Echo results'
         id: output-changelog
         run: |
           echo "${{ steps.changelog.outputs.changes }}"

.github/workflows/linters.yml

@@ -2,17 +2,15 @@
 # yaml-language-server: $schema=https://json.schemastore.org/github-workflow.json
 name: Lint Code Base
 
-# yamllint disable-line
 on:
   pull_request:
-    branches: [main]
+    branches: [master, main]
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-permissions:
-  contents: read
+permissions: read-all
 
 jobs:
   Linter:
@@ -20,20 +18,19 @@ jobs:
     runs-on: ubuntu-latest
     timeout-minutes: 15
     permissions:
-      contents: read
-      issues: write
-      packages: read
-      pull-requests: write
       statuses: write
+      contents: read
+      packages: read
 
     steps:
       - name: Checkout
-        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
 
       - name: Yarn Lock Changes
-        uses: Simek/yarn-lock-changes@59f47ee499424d2c2437c5aebf863b5c6d50a5bc # v0.14.1
+        uses: Simek/yarn-lock-changes@34017425198654c20162a4dfd4f238fbece9636f # v0.12.1
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
 
       - name: Run PR Lint
-        uses: ivuorinen/actions/pr-lint@1da3a0e79fcd7da6bed9ee1979f1449ba11f58f9 # v2026.03.14
+        # https://github.com/ivuorinen/actions
+        uses: ivuorinen/actions/pr-lint@9480614ba2231013d99dd5b9c730d2b105b9e160 # 25.6.25

.github/workflows/new-release.yml

@@ -5,28 +5,26 @@ name: Release Daily State
 on:
   workflow_dispatch:
   schedule:
-    - cron: "0 21 * * *" # 00:00 at Europe/Helsinki
+    - cron: '0 21 * * *' # 00:00 at Europe/Helsinki
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-permissions:
-  contents: read
+permissions: read-all
 
 jobs:
   new-daily-release:
-    runs-on: ubuntu-latest
+    runs-on: self-hosted
 
-    permissions:
-      contents: write
+    permissions: write-all
 
     outputs:
       created: ${{ steps.daily-version.outputs.created }}
       version: ${{ steps.daily-version.outputs.version }}
 
     steps:
-      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
 
       - name: Create tag if necessary
         uses: fregante/daily-version-action@fb1a60b7c4daf1410cd755e360ebec3901e58588 # v2.1.3
@@ -35,14 +33,14 @@ jobs:
       - name: Create changelog text
         if: steps.daily-version.outputs.created
         id: changelog
-        uses: loopwerk/tag-changelog@8dd150d55fbf1fe93e0ea00a29a6153aaeb81912 # v1.5.0
+        uses: loopwerk/tag-changelog@941366edb8920e2071eae0449031830984b9f26e # v1.3.0
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
           config_file: .github/tag-changelog-config.js
 
       - name: Create release
         if: steps.daily-version.outputs.created
-        uses: softprops/action-gh-release@153bb8e04406b158c6c84fc1615b65b24149a1fe # v2.6.1
+        uses: softprops/action-gh-release@72f2c25fcb47643c292f7107632f7a47c1df5cd8 # v2.3.2
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
           tag_name: ${{ steps.daily-version.outputs.version }}

.github/workflows/pre-commit-autoupdate.yml

@@ -5,35 +5,34 @@ name: Pre-commit autoupdate
 on:
   schedule:
     # At 04:00 on Monday and Thursday.
-    - cron: "0 4 * * 1,4"
+    - cron: '0 4 * * 1,4'
   workflow_dispatch:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-permissions:
-  contents: read
+permissions: read-all
 
 jobs:
   auto-update:
-    runs-on: ubuntu-latest
+    runs-on: self-hosted
 
     permissions:
       contents: write
       pull-requests: write
 
     steps:
-      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
 
-      - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
+      - uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
 
       - run: pip install pre-commit && pre-commit autoupdate
 
-      - uses: peter-evans/create-pull-request@c0f553fe549906ede9cf27b5156039d195d2ece0 # v8.1.0
+      - uses: peter-evans/create-pull-request@271a8d0340265f705b14b6d32b9829c1cb33d45e # v7.0.8
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
           branch: update/pre-commit-hooks
-          title: "chore: update pre-commit hooks"
-          commit-message: "chore: update pre-commit hooks"
+          title: 'chore: update pre-commit hooks'
+          commit-message: 'chore: update pre-commit hooks'
           body: Update versions of pre-commit hooks to latest version.

.github/workflows/semantic-pr.yml

@@ -2,9 +2,8 @@
 # $schema: "https://json.schemastore.org/github-workflow.json"
 name: Semantic PR
 
-# yamllint disable-line
 on:
-  pull_request:
+  pull_request_target:
     types:
       - opened
       - edited
@@ -14,15 +13,14 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-permissions:
-  pull-requests: read
+permissions: read-all
 
 jobs:
   semantic-pr:
-    runs-on: ubuntu-latest
+    runs-on: self-hosted
 
     steps:
-      - uses: amannn/action-semantic-pull-request@48f256284bd46cdaab1048c3721360e808335d50 # v6.1.1
+      - uses: amannn/action-semantic-pull-request@0723387faaf9b38adef4775cd42cfd5155ed6017 # v5.5.3
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         with:

.github/workflows/sync-labels.yml

@@ -11,7 +11,7 @@ on:
       - .github/workflows/sync-labels.yml
       - .github/labels.yml
   schedule:
-    - cron: "34 5 * * *"
+    - cron: '34 5 * * *'
   workflow_call:
   workflow_dispatch:
 
@@ -19,15 +19,14 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-permissions:
-  contents: read
+permissions: read-all
 
 jobs:
   SyncLabels:
-    runs-on: ubuntu-latest
+    runs-on: self-hosted
 
     permissions:
       issues: write
 
     steps:
-      - uses: ivuorinen/actions/sync-labels@1da3a0e79fcd7da6bed9ee1979f1449ba11f58f9 # v2026.03.14
+      - uses: ivuorinen/actions/sync-labels@99f3911475dbb5b8d43d314b24c0882997433868 # 25.6.23

.github/workflows/update-submodules.yml

@@ -5,48 +5,44 @@ name: Update submodules
 on:
   schedule:
     # At 04:00 on Monday and Thursday.
-    - cron: "0 4 * * 1,4"
+    - cron: '0 4 * * 1'
   workflow_dispatch:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
-permissions:
-  contents: read
+permissions: read-all
 
 jobs:
   update-submodules:
-    runs-on: ubuntu-latest
+    runs-on: self-hosted
 
-    permissions:
-      contents: write
+    permissions: write-all
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
         with:
           submodules: true
           fetch-depth: 2
           token: ${{secrets.GITHUB_TOKEN}}
 
       - name: Config Git User
-        shell: bash
         run: |
           git config --global user.name "${{ github.actor }}"
           git config --global user.email "${{ github.actor }}@users.noreply.github.com"
 
       - name: Update submodules
-        shell: bash
         run: |
           git submodule sync
-          git submodule foreach --quiet "
-            tag=\"$(git describe --tags --abbrev=0 origin/HEAD)\"
-            if [ \"$(git describe --tags)\" != \"$tag\" ]; then
-              git checkout --quiet \"$tag\"
-              echo \"$name updated to $tag\"
+          git submodule foreach --quiet '
+            tag="$(git describe --tags --abbrev=0 origin/HEAD)"
+            if [ "$(git describe --tags)" != "$tag" ]; then
+              git checkout --quiet "$tag"
+              echo "$name updated to $tag"
             fi
-          "
+          '
 
           if git diff --quiet; then
             echo "No updates for submodules."

.gitignore

@@ -9,64 +9,43 @@
 .env
 .idea
 .nfs*
-.scannerwork
 .vscode
-.yarn/
-!config/git/local.d/.gitkeep
-!config/nvim/spell/.gitkeep
-!config/zed/settings.json
-!ssh/local.d/.gitkeep
-**/exports-secret.fish
-**/exports.secret.fish
-*.tmp.*
 Brewfile.lock.json
 antidote_plugins.zsh
 config/alacritty/theme-active.toml
 config/cheat/cheatsheets/pure-bash-bible/*
 config/cheat/cheatsheets/tldr/*
-config/fish/completions/asdf.fish
-config/fish/completions/kubectl.fish
-config/fish/completions/orbctl.fish
-config/fish/fish_variables
-config/fish/fish_variables.*
-config/fish/secrets.d/*
-!config/fish/secrets.d/*.example
-!config/fish/secrets.d/README.md
-config/gh/hosts.yml
 config/git/credentials
-config/git/local.d/*
 config/gnupg/S.*
 config/gnupg/private-keys-v1.d
 config/gnupg/s
 config/iterm2/AppSupport
-config/karabiner/automatic_backups
 config/npm/npmrc
 config/nvim/lazy-lock.json
 config/nvim/spell/*
-config/op/plugins/gh.json
-config/op/plugins/used_items/gh.json
-config/vim/.netrwhist
-config/vim/extra/*
+!config/nvim/spell/.gitkeep
+config/git/local.d/*
+!config/git/local.d/.gitkeep
 config/vim/fzf
 config/vim/plugged/*
 config/zed/*
-config/zed/settings.json
+!config/zed/settings.json
 config/zsh/.zcompdump
-dependency-check-report.html
 iTermServer-*
 lazy-lock.json
-local/bin/asdf/plugins/*
-local/bin/yabai
-local/man/yabai.1
 local/share/fonts/*
+local/bin/asdf/plugins/*
 lock
 node_modules
-__pycache__
 ssh/local.d/*
-config/fish/fish_variables*
-
-# Allow .claude directory (overrides global **/.claude/* ignore)
-!.claude/
-!.claude/**
-.claude/**/*.log
-.claude/settings.local.json
+!ssh/local.d/.gitkeep
+config/fish/fish_variables
+**/exports.secret.fish
+**/exports-secret.fish
+config/fish/completions/asdf.fish
+config/vim/.netrwhist
+config/vim/extra/*
+config/gh/hosts.yml
+dependency-check-report.html
+local/bin/yabai
+local/man/yabai.1

.gitmodules

@@ -4,6 +4,11 @@
 	url = https://github.com/anishathalye/dotbot.git
 	ignore = dirty
 
+[submodule "dotbot-brew"]
+	path = tools/dotbot-brew
+	url = https://github.com/wren/dotbot-brew.git
+	ignore = dirty
+
 [submodule "dotbot-include"]
 	path = tools/dotbot-include
 	url = https://gitlab.com/gnfzdz/dotbot-include.git
@@ -19,16 +24,41 @@
 	url = https://github.com/tmux-plugins/tmux-continuum
 	ignore = dirty
 
+[submodule "tmux/tmux-sensible"]
+	path = config/tmux/plugins/tmux-sensible
+	url = https://github.com/tmux-plugins/tmux-sensible.git
+	ignore = dirty
+
 [submodule "tmux/tmux-sessionist"]
 	path = config/tmux/plugins/tmux-sessionist
 	url = https://github.com/tmux-plugins/tmux-sessionist.git
 	ignore = dirty
 
+[submodule "tmux/tmux-yank"]
+	path = config/tmux/plugins/tmux-yank
+	url = https://github.com/tmux-plugins/tmux-yank.git
+	ignore = dirty
+
+[submodule "tmux/tmux-window-name"]
+	path = config/tmux/plugins/tmux-window-name
+	url = https://github.com/ivuorinen/tmux-window-name.git
+	ignore = dirty
+
+[submodule "dotbot-pip"]
+	path = tools/dotbot-pip
+	url = https://github.com/sobolevn/dotbot-pip.git
+	ignore = dirty
+
 [submodule "tmux/tmux-suspend"]
 	path = config/tmux/plugins/tmux-suspend
 	url = https://github.com/MunifTanjim/tmux-suspend.git
 	ignore = dirty
 
+[submodule "tmux/tmux-mode-indicator"]
+	path = config/tmux/plugins/tmux-mode-indicator
+	url = https://github.com/MunifTanjim/tmux-mode-indicator.git
+	ignore = dirty
+
 [submodule "tmux/tmux-current-pane-hostname"]
 	path = config/tmux/plugins/tmux-current-pane-hostname
 	url = https://github.com/soyuka/tmux-current-pane-hostname.git
@@ -41,7 +71,7 @@
 
 [submodule "tmux/tmux-dark-notify"]
 	path = config/tmux/plugins/tmux-dark-notify
-	url = https://github.com/ivuorinen/tmux-dark-notify.git
+	url = https://github.com/erikw/tmux-dark-notify.git
 	ignore = dirty
 
 [submodule "antidote"]
@@ -53,8 +83,3 @@
 [submodule "tmux/tmux-resurrect"]
 	path = config/tmux/plugins/tmux-resurrect
 	url = https://github.com/tmux-plugins/tmux-resurrect.git
-	ignore = dirty
-[submodule "tmux/catppuccin"]
-	path = config/tmux/plugins/catppuccin
-	url = https://github.com/catppuccin/tmux.git
-	ignore = dirty

.ignore

@@ -1,10 +1,10 @@
 **/__pycache__/**
-*.pyc
 .git/**
 config/cheat/cheatsheets/community/**
 config/tmux/plugins/**
-config/vim/plugged/**
 node_modules
 tools/antidote/**
+tools/dotbot-brew/**
 tools/dotbot-include/**
 tools/dotbot/**
+*.pyc

.markdownlint.json

@@ -0,0 +1,19 @@
+{
+  "extends": "@ivuorinen/markdownlint-config",
+  "code-block-style": {
+    "style": "fenced"
+  },
+  "code-fence-style": {
+    "style": "backtick"
+  },
+  "heading-style": {
+    "style": "atx"
+  },
+  "no-duplicate-heading": {
+    "siblings_only": true
+  },
+  "required-headings": false,
+  "ul-style": {
+    "style": "dash"
+  }
+}

.markdownlintignore

@@ -1,10 +1,9 @@
 # only care about files that are directly under our control
-.git/*
 config/cheat/cheatsheets/community/*
 config/cheat/cheatsheets/tldr/*
 config/op/plugins/used_plugins/*
 config/tmux/plugins/*
-config/vim/*
 local/bin/asdf/*
-node_modules/*
 tools/*
+node_modules/*
+

.mega-linter.yml

@@ -2,6 +2,7 @@
 # Configuration file for MegaLinter
 # See all available variables at
 # https://megalinter.io/configuration/ and in linters documentation
+
 APPLY_FIXES: all
 SHOW_ELAPSED_TIME: false # Show elapsed time at the end of MegaLinter run
 PARALLEL: true
@@ -9,21 +10,20 @@ VALIDATE_ALL_CODEBASE: true
 FILEIO_REPORTER: false # Generate file.io report
 GITHUB_STATUS_REPORTER: true # Generate GitHub status report
 IGNORE_GENERATED_FILES: true # Ignore generated files
+JAVASCRIPT_DEFAULT_STYLE: prettier # Default style for JavaScript
 PRINT_ALPACA: false # Print Alpaca logo in console
 SARIF_REPORTER: true # Generate SARIF report
 SHOW_SKIPPED_LINTERS: false # Show skipped linters in MegaLinter log
+TYPESCRIPT_DEFAULT_STYLE: prettier # Default style for TypeScript
+
 DISABLE_LINTERS:
   - REPOSITORY_DEVSKIM
-  - JAVASCRIPT_ES # using biome
-  - JAVASCRIPT_PRETTIER # using biome
-  - TYPESCRIPT_PRETTIER # using biome
-  - JSON_PRETTIER # using biome
-  - PYTHON_BLACK # using ruff
-  - PYTHON_FLAKE8 # using ruff
-  - PYTHON_PYLINT # using ruff
-  - PYTHON_ISORT # using ruff (I rules)
+
 YAML_YAMLLINT_CONFIG_FILE: .yamllint.yml
-REPOSITORY_GIT_DIFF_DISABLE_ERRORS: true
-BASH_SHFMT_ARGUMENTS: -i 2 -bn -ci -sr -fn
+MARKDOWN_MARKDOWNLINT_CONFIG_FILE: .markdownlint.json
+JAVASCRIPT_ES_CONFIG_FILE: .eslintrc.json
+TYPESCRIPT_ES_CONFIG_FILE: .eslintrc.json
+
 FILTER_REGEX_EXCLUDE: >
   (node_modules|tools|config/cheat/cheatsheets/community|config/cheat/cheatsheets/tldr|config/fzf|config/zsh|config/tmux/plugins)
+

.mise.toml

@@ -1,4 +0,0 @@
-[tools]
-node = "24.14.0"
-python = "3.14.3"
-go = "1.26.1"

.nvmrc

@@ -0,0 +1 @@
+22.17.0

.pre-commit-config.yaml

@@ -1,7 +1,6 @@
----
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v6.0.0
+    rev: v5.0.0
     hooks:
       - id: requirements-txt-fixer
       - id: detect-aws-credentials
@@ -20,64 +19,47 @@ repos:
       - id: end-of-file-fixer
       - id: mixed-line-ending
         args: [--fix=auto]
+      - id: pretty-format-json
+        args: [--autofix, --no-sort-keys]
 
-  - repo: local
+  - repo: https://github.com/igorshubovych/markdownlint-cli
+    rev: v0.45.0
     hooks:
-      - id: biome-check
-        name: Biome Check
-        entry: yarn biome check --write --files-ignore-unknown=true --no-errors-on-unmatched
-        language: system
-        files: \.(js|ts|jsx|tsx|json)$
-      - id: markdown-table-formatter
-        name: Markdown Table Formatter
-        entry: yarn markdown-table-formatter
-        language: system
-        types: [markdown]
+      - id: markdownlint
+        args: [-c, .markdownlint.json, --fix]
 
   - repo: https://github.com/adrienverge/yamllint
-    rev: v1.38.0
+    rev: v1.37.1
     hooks:
       - id: yamllint
 
-  - repo: local
-    hooks:
-      - id: prettier
-        name: Prettier (YAML)
-        entry: yarn prettier --write
-        language: system
-        types_or: [yaml]
-
-  - repo: https://github.com/shellcheck-py/shellcheck-py
-    rev: v0.11.0.1
+  - repo: https://github.com/koalaman/shellcheck-precommit
+    rev: v0.10.0
     hooks:
       - id: shellcheck
 
   - repo: https://github.com/scop/pre-commit-shfmt
-    rev: v3.12.0-2
+    rev: v3.11.0-1
     hooks:
       - id: shfmt
-        args: [-i, "2", -bn, -ci, -sr, -fn, -w]
 
   - repo: https://github.com/rhysd/actionlint
-    rev: v1.7.11
+    rev: v1.7.7
     hooks:
       - id: actionlint
 
+  - repo: https://github.com/renovatebot/pre-commit-hooks
+    rev: 41.11.1
+    hooks:
+      - id: renovate-config-validator
+
   - repo: https://github.com/JohnnyMorganz/StyLua
-    rev: v2.4.0
+    rev: v2.1.0
     hooks:
       - id: stylua # or stylua-system / stylua-github
-        exclude: hammerspoon\.types\.lua$
 
   - repo: https://github.com/hugoh/pre-commit-fish.git
     rev: v1.2
     hooks:
       - id: fish_syntax
       - id: fish_indent
-
-  - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.6
-    hooks:
-      - id: ruff-check
-        args: [--fix]
-      - id: ruff-format

.prettierignore

@@ -1,18 +1,15 @@
-node_modules
-.yarn
-.pnp.*
-.mypy_cache
+# vim: ft=gitignore
+.mypy_cache/*
 Brewfile.lock.json
-lazy-lock.json
 config/cheat/cheatsheets/community
 config/cheat/cheatsheets/tldr
-config/fzf
-config/nvim
-config/op/plugins/used_plugins
-config/tmux/plugins
-config/vim/plugged
-config/zsh
+config/fzf/*
+config/nvim/*
+config/op/plugins/used_plugins/*
+config/tmux/plugins/*
+config/zsh/*
+lazy-lock.json
 local/bin/antigen.zsh
 local/bin/asdf
-tools
-config/gh/hosts.yml
+tools/antidote/*
+tools/dotbot*

.prettierrc.js

@@ -0,0 +1,14 @@
+module.exports = {
+  ...require('@ivuorinen/prettier-config'),
+  trailingComma: 'all',
+  // Add custom options below:
+  overrides: [
+    {
+      files: '*.md',
+      options: {
+        printWidth: 120,
+        proseWrap: 'preserve',
+      },
+    },
+  ],
+}

.prettierrc.json

@@ -1,9 +0,0 @@
-{
-  "$schema": "https://json.schemastore.org/prettierrc",
-  "printWidth": 200,
-  "tabWidth": 2,
-  "useTabs": false,
-  "endOfLine": "lf",
-  "singleQuote": false,
-  "proseWrap": "preserve"
-}

.python-version

@@ -0,0 +1 @@
+3.13.5

.serena/.gitignore

@@ -1 +0,0 @@
-/cache

.serena/memories/areas_for_improvement.md

@@ -1,67 +0,0 @@
-# Areas for Improvement
-
-## Code Quality Enhancements
-
-### 1. Configuration Management
-
-- **Inconsistent indentation**: Mixed tabs/spaces across config files
-- **Line length management**: Need consistent enforcement of limits
-- **Template standardization**: Memory files need consistent formatting template
-
-### 2. Linting Configuration Improvements
-
-- **Shellcheck exclusions**: Add proper ignore patterns for submodules
-- **EditorConfig refinement**: Some rules too strict for generated/third-party content
-- **Prettier ignore patterns**: Better exclusion of binary/generated files
-
-### 3. Testing Infrastructure
-
-- **Bats test errors**: Tests failing due to missing `rm` command in PATH
-- **Test coverage**: Limited test coverage for shell functions
-- **CI/CD integration**: Need automated linting in GitHub Actions
-
-### 4. Documentation Gaps
-
-- **Onboarding docs**: Missing clear setup instructions for new contributors
-- **Troubleshooting guide**: Need common error resolution steps
-- **Architecture overview**: Missing high-level system architecture
-
-## Performance & Maintenance
-
-### 5. Submodule Management
-
-- **Large submodules**: Some submodules contain unnecessary files
-- **Update frequency**: Need systematic submodule update process
-- **Dependency tracking**: Better documentation of submodule purposes
-
-### 6. Cross-Platform Considerations
-
-- **Darwin-specific paths**: Some hardcoded macOS paths could be parameterized
-- **Shell compatibility**: More testing across bash/zsh/fish environments
-- **Tool availability**: Better fallbacks when optional tools missing
-
-### 7. Security & Privacy
-
-- **Secret management**: Better examples for secret configuration
-- **Permission handling**: Some scripts could use more restrictive permissions
-- **Audit trail**: Track configuration changes and their impact
-
-## Development Workflow
-
-### 8. Automation Opportunities
-
-- **Auto-formatting**: Pre-commit hooks for consistent formatting
-- **Dependency updates**: Automated updates for package.json dependencies
-- **Health checks**: Scripts to validate configuration integrity
-
-### 9. Error Handling
-
-- **Graceful degradation**: Better fallbacks when tools unavailable
-- **Error messages**: More informative error output
-- **Recovery procedures**: Automated recovery from common failures
-
-### 10. Modularity
-
-- **Configuration splitting**: Some large config files could be modularized
-- **Feature flags**: Optional components for minimal installations
-- **Host-specific configs**: Better organization of machine-specific settings

.serena/memories/code_style_conventions.md

@@ -1,50 +0,0 @@
-# Code Style and Conventions
-
-## EditorConfig Rules (.editorconfig)
-
-- **Charset**: UTF-8
-- **Line endings**: LF
-- **Indent style**: Spaces (except for specific files)
-- **Indent size**: 2 spaces (default)
-- **Final newline**: Required
-- **Trailing whitespace**: Trimmed
-
-### Language-specific Rules
-
-- **Fish scripts**: 4-space indent, 80 char line limit
-- **PHP files**: 4-space indent
-- **Markdown**: 120 char line limit
-- **Lua**: 90 char line limit
-- **Git files**: Tab indentation
-- **Shell scripts**: 2-space indent with specific shfmt settings
-
-## Prettier Configuration
-
-- Extends `@ivuorinen/prettier-config`
-- **Trailing commas**: Always
-- **Markdown**: 120 char width, preserve prose wrapping
-
-## ESLint Configuration
-
-- Extends `@ivuorinen` base configuration
-- Applied to JavaScript/TypeScript files
-
-## Shell Script Standards (.shellcheckrc)
-
-- External sources following enabled
-- Disabled checks: SC2039, SC2166, SC2154, SC1091, SC2174, SC2016
-- Must include shebang or `# shellcheck shell=bash`
-
-## Formatting Tools
-
-- **Shell scripts**: shfmt with specific rules
-- **Markdown**: markdownlint + prettier
-- **JavaScript/TypeScript**: prettier + eslint
-- **YAML**: yamllint
-
-## Naming Conventions
-
-- **Shell functions**: Use `x-` prefix for cross-shell compatibility
-- **Environment variables**: UPPERCASE with underscores
-- **File names**: lowercase with hyphens for scripts
-- **Directory structure**: lowercase, organized by tool/purpose

.serena/memories/critical_linting_errors.md

@@ -1,80 +0,0 @@
-# Critical Linting Errors That Must Be Fixed
-
-## Current Status: BLOCKING Issues Identified
-
-The linting system has revealed 150+ violations across multiple categories that must be addressed immediately.
-
-## EditorConfig Violations (High Priority)
-
-### Missing Final Newlines
-
-- All `.serena/memories/*.md` files missing final newlines
-- Multiple project configuration files affected
-- This is a BLOCKING issue per user instructions
-
-### Line Length Violations
-
-- Fish shell configs exceed 80-character limit (`.editorconfig` enforced)
-- Memory files have lines exceeding 120-character limit
-- WezTerm configuration files have long lines
-
-### Indentation Errors
-
-- Git configuration using tabs instead of spaces
-- WezTerm color scheme files using tabs vs spaces
-- Perl scripts with inconsistent indentation
-
-## Markdownlint Issues (Memory Files)
-
-### Systematic Problems Across All Memory Files
-
-- Missing blank lines around headings (MD022)
-- Lists not surrounded by blank lines (MD032)
-- Fenced code blocks not surrounded by blank lines (MD031)
-- Trailing punctuation in headings (MD026)
-- Missing language specification for fenced code blocks (MD040)
-- Missing final newlines (MD047)
-
-### Specific Files Affected
-
-- `areas_for_improvement.md`: 20+ violations
-- `code_style_conventions.md`: 15+ violations
-- `critical_linting_errors.md`: 25+ violations
-- `darwin_system_utilities.md`: 15+ violations
-- `immediate_action_items.md`: 25+ violations
-- `project_overview.md`: 15+ violations
-- `project_structure.md`: 20+ violations
-- `shellcheck_issues.md`: 15+ violations
-- `suggested_commands.md`: 25+ violations
-- `task_completion_checklist.md`: 10+ violations
-
-## Prettier Formatting Issues
-
-### JSON Configuration Files
-
-- `.commitlintrc.json`, `.eslintrc.json`, `.luarc.json`
-- `.releaserc.json`, `.github/renovate.json`
-- Host-specific configurations in `config/` directory
-
-### YAML Files
-
-- `.mega-linter.yml` formatting inconsistencies
-- Various configuration files needing formatting
-
-## Immediate Action Required
-
-1. **Fix memory files**: Apply markdown formatting rules
-2. **Run auto-fixers**: `yarn fix` to address automatic fixes
-3. **Manual corrections**: Address remaining EditorConfig violations
-4. **Validation**: Ensure `yarn lint` passes completely
-
-## Impact Assessment
-
-These violations prevent:
-
-- Successful CI/CD pipeline execution
-- Code quality standards compliance
-- Pre-commit hook success
-- Project maintainability standards
-
-Per user instructions: "Linting issues ARE NOT ACCEPTABLE" and "EditorConfig problems are blocking errors"

.serena/memories/darwin_system_utilities.md

@@ -1,66 +0,0 @@
-# Darwin (macOS) System Utilities
-
-## Available Command Paths
-
-Based on the current system setup:
-
-### Core System Commands
-
-- `git`: `/opt/homebrew/bin/git` (Homebrew version)
-- `find`: `/usr/bin/find` (system version)
-- `cd`: shell built-in command
-- `ls`: aliased to `eza -h -s=type --git --icons --group-directories-first`
-- `grep`: aliased to `grep --color`
-
-### Modern Alternatives (Rust-based)
-
-- `fd`: `/Users/ivuorinen/.local/share/cargo/bin/fd` (modern find)
-- `rg`: `/Users/ivuorinen/.local/share/cargo/bin/rg` (ripgrep for text search)
-
-## Recommended Usage Patterns
-
-### File Search
-
-```bash
-# Use fd instead of find when possible
-fd "*.sh"                    # Find shell scripts
-fd -t f -e lua              # Find Lua files
-find . -name "*.sh"         # Fallback to system find
-```
-
-### Text Search
-
-```bash
-# Use rg (ripgrep) instead of grep when possible
-rg "function.*bash"         # Search for bash functions
-rg -t shell "export"        # Search in shell files only
-grep "pattern" file.txt     # Fallback to system grep
-```
-
-### Directory Navigation
-
-```bash
-# Use eza features via ls alias
-ls                          # Shows icons, git status, grouped directories
-ls -la                      # Long format with hidden files
-cd /full/path               # Always use full paths in scripts
-```
-
-## Path Configuration
-
-The system is configured with these PATH priorities:
-
-1. `~/.local/bin` (user scripts)
-2. `~/.dotfiles/local/bin` (dotfiles scripts)
-3. `~/.local/share/bob/nvim-bin` (Neovim)
-4. `~/.local/share/cargo/bin` (Rust tools like fd, rg)
-5. `/opt/homebrew/bin` (Homebrew packages)
-6. `/usr/local/bin` (system packages)
-
-## Shell Compatibility
-
-The dotfiles support multiple shells through `config/shared.sh`:
-
-- Functions prefixed with `x-` work across bash, zsh, and fish
-- Path management handled automatically per shell
-- Environment variables set appropriately per shell

.serena/memories/immediate_action_items.md

@@ -1,114 +0,0 @@
-# Immediate Action Items - Priority Order
-
-## HIGH PRIORITY (Must Fix Before Any Development)
-
-### 1. Fix Memory File Formatting (BLOCKING)
-
-```bash
-# These files prevent any linting from passing:
-- .serena/memories/code_style_conventions.md
-- .serena/memories/darwin_system_utilities.md
-- .serena/memories/project_overview.md
-- .serena/memories/project_structure.md
-- .serena/memories/suggested_commands.md
-- .serena/memories/task_completion_checklist.md
-
-# Issues: Missing final newlines, markdown formatting, line length
-# Impact: Blocks all linting commands
-```
-
-### 2. Fix Fish Shell Line Length Violations (BLOCKING)
-
-```bash
-# Files exceeding 80-char limit:
-config/fish/alias.fish (4 violations)
-config/fish/exports.fish (15 violations)
-
-# These are CRITICAL - Fish config has strict limits
-# Must be fixed before any fish-related changes
-```
-
-### 3. Fix Git Configuration Indentation (BLOCKING)
-
-```bash
-# Files with tab/space mixing:
-config/git/shared (40+ violations)
-hosts/s/config/git/overrides/config
-hosts/s/config/git/local.d/work-git
-
-# Impact: Git configuration may not work correctly
-```
-
-## MEDIUM PRIORITY (Fix During Next Development Cycle)
-
-### 4. Prettier Formatting Issues
-
-```bash
-# 17 files need prettier formatting:
-yarn fix:prettier
-# Most are JSON/YAML configuration files
-```
-
-### 5. WezTerm Color Scheme Indentation
-
-```bash
-# All files in config/wezterm/colors/ using tabs instead of spaces
-# Affects terminal appearance configuration
-```
-
-### 6. Update Linting Configuration
-
-```bash
-# Add shellcheck exclusions for submodules:
-# - tools/antidote/
-# - config/tmux/plugins/
-# - config/vim/extra/fzf/
-# - config/cheat/cheatsheets/tldr/
-```
-
-## LOW PRIORITY (Future Improvements)
-
-### 7. Test Infrastructure
-
-```bash
-# Fix bats test PATH issues
-# Tests pass but show rm command not found errors
-```
-
-### 8. Documentation Updates
-
-```bash
-# Add troubleshooting section to AGENTS.md
-# Create shellcheck exclusion documentation
-```
-
-## Immediate Commands to Run
-
-### Step 1: Auto-fix What's Possible
-
-```bash
-yarn fix:prettier    # Fix 17 files
-yarn fix:markdown    # Attempt markdown fixes
-```
-
-### Step 2: Manual Fixes Required
-
-- Add final newlines to all memory files
-- Wrap long lines in Fish configuration files
-- Convert tabs to spaces in Git configuration files
-
-### Step 3: Verify Progress
-
-```bash
-yarn lint:ec         # Check EditorConfig compliance
-yarn lint:markdown   # Check markdown issues
-yarn lint:prettier   # Check remaining prettier issues
-```
-
-## Success Criteria
-
-✅ `yarn lint` passes without errors
-✅ All EditorConfig violations resolved
-✅ Memory files properly formatted
-✅ Fish configuration under line limits
-✅ Git configuration uses consistent indentation

.serena/memories/project_overview.md

@@ -1,60 +0,0 @@
-# .dotfiles Project Overview
-
-## Purpose
-
-This is a comprehensive personal dotfiles repository for managing development
-environment configurations across macOS systems. The project uses **Dotbot** as
-the primary installation framework to manage symlinks and setup configurations.
-
-## Key Features
-
-- Automated configuration management using Dotbot
-- Support for multiple development tools and applications
-- Host-specific configurations in `/hosts/` directory
-- Comprehensive testing and linting setup with pre-commit hooks
-- Cross-shell compatibility (bash, zsh, fish)
-- Large collection of custom utility scripts in `local/bin/`
-- Git submodules for external tools (dotbot, antidote, tmux plugins)
-- Environment-specific configurations (secrets management)
-
-## Recent Notable Changes (from git status)
-
-- New everforest color theme configurations added
-- Multiple temporary fish configuration files present
-- Updates to various configuration files (.commitlintrc.json, .eslintrc.json, etc.)
-- New x-pr-comments script and documentation added
-- Various tmux plugin updates
-- Husky configuration relocated from base/ to config/husky/
-
-## Tech Stack
-
-- **Shell**: Bash (primary), with Fish and Zsh support
-- **Configuration Manager**: Dotbot with plugins (asdf, brew, include, pip)
-- **Package Manager**: Yarn 1.22.22 (Node.js), Homebrew (macOS), pipx (Python)
-- **Testing**: Bats test framework, custom test-all.sh script
-- **Linting**: MegaLinter, Prettier, ESLint, Markdownlint, ShellCheck, EditorConfig
-- **Automation**: Pre-commit hooks, GitHub Actions, Renovate
-
-## Project Structure Highlights
-
-- `/config/` - Main configuration directory (74+ subdirectories)
-- `/local/bin/` - Custom utility scripts (100+ scripts with documentation)
-- `/hosts/` - Host-specific configurations
-- `/tools/` - Git submodules for external tools
-- `/base/` - Base configuration files
-- `/secrets/` - Secret management configurations
-- `/scripts/` - Installation and setup scripts
-- `/.github/` - GitHub Actions workflows and configurations
-
-## Target System
-
-- **Platform**: Darwin (macOS) - Version 24.6.0
-- **Architecture**: Universal (Intel/Apple Silicon via Homebrew)
-- **Dependencies**: Git, Homebrew, Yarn, various CLI tools managed via mise
-
-## Development Environment
-
-- Node.js, Go, Python, Ruby, Rust managed via mise
-- Version files (.nvmrc, .go-version, .python-version) consumed by mise via idiomatic_version_file
-- Package management via Yarn with lockfile
-- TypeScript support for configuration files

.serena/memories/project_structure.md

@@ -1,116 +0,0 @@
-# Project Structure
-
-## Root Directory
-
-```text
-.dotfiles/
-├── install                 # Main installation script (Dotbot runner)
-├── install.conf.yaml      # Dotbot configuration
-├── package.json           # Node.js dependencies for linting/testing (Yarn managed)
-├── AGENTS.md              # Project documentation and guidelines
-├── test-all.sh            # Bats test runner
-├── add-submodules.sh      # Git submodule management
-└── .serena/               # Claude Code/Serena analysis cache (new)
-```
-
-## Main Directories
-
-### `config/` (74+ subdirectories)
-
-Configuration files for development tools and applications:
-
-- `git/` - Git configuration with delta integration and everforest theme
-- `nvim/` - Neovim configuration with Lua plugins
-- `tmux/` - Tmux configuration with multiple plugins (dark-notify, window-name, etc.)
-- `fish/` - Fish shell configuration with completions and functions
-- `zsh/` - Zsh configuration with antidote plugin manager
-- `fzf/` - Fuzzy finder configuration with everforest theme
-- `wezterm/` - WezTerm terminal configuration
-- `homebrew/` - Homebrew environment configuration
-- `starship.toml` - Starship prompt configuration
-- `shared.sh` - Cross-shell compatibility functions
-- `aerospace/`, `amethyst/`, `yabai/`, `skhd/` - Window managers
-- `direnv/`, `mise/`, `aqua/` - Development environment tools
-- `gpg-tui/`, `op/`, `gh/` - Security and CLI tools
-- Theme configurations: everforest color schemes across multiple tools
-
-### `base/`
-
-Dotfiles that get symlinked to home directory with `.` prefix:
-
-- Contains traditional dotfiles like `.bashrc`, `.zshrc`, etc.
-- `plan` - Planning/note-taking configuration
-- `shellcheckrc` - ShellCheck rules
-
-### `local/`
-
-- `bin/` - 100+ custom scripts with comprehensive documentation
-  - Homegrown utilities (dfm, git tools, backup scripts, etc.)
-  - Sourced utilities (from skx/sysadmin-util, mvdan/dotfiles)
-  - Each script has corresponding .md documentation
-  - Recent additions: x-pr-comments for GitHub PR analysis
-- `share/fonts/` - JetBrains Mono font files
-- `man/` - Manual pages
-
-### `ssh/`
-
-SSH configuration files (mode 0600/0700)
-
-- `shared.d/` - Shared SSH configurations for specific hosts
-
-### `tools/` (Git submodules)
-
-External tools and Dotbot plugins:
-
-- `dotbot/` - Dotbot installation framework
-- `dotbot-*` - Dotbot plugins (asdf, brew, include, pip)
-- `antidote/` - Zsh plugin manager
-- Various tmux plugins (continuum, resurrect, yank, etc.)
-
-### `hosts/`
-
-Host-specific configurations:
-
-- `air/`, `s/`, `v/` - Individual host configurations
-- Applied after main configuration
-
-### `secrets/`
-
-Secret and credential management configuration
-
-### `scripts/`
-
-Installation and setup automation scripts
-
-### `.github/`
-
-- GitHub Actions workflows
-- Renovate configuration
-- Issue templates and documentation
-
-### Development Configuration Files
-
-- `.editorconfig` - Editor configuration rules
-- `.prettierrc.js` - Prettier formatting rules
-- `.eslintrc.json` - ESLint linting rules
-- `.commitlintrc.json` - Commit message linting
-- `.shellcheckrc` - ShellCheck configuration
-- `.mega-linter.yml` - MegaLinter configuration
-- `.luarc.json` - Lua language server configuration
-- `.nvmrc`, `.go-version`, `.python-version` - Version files (consumed by mise)
-- Various ignore files (.gitignore, .prettierignore, .yamlignore, etc.)
-
-## Testing Infrastructure
-
-- `tests/` - Bats test files
-- `test-all.sh` - Main test runner
-- Pre-commit hooks for automated testing
-- GitHub Actions for CI/CD
-
-## Recent Structural Changes
-
-- Husky configuration moved from `base/huskyrc` to `config/husky/init.sh`
-- Addition of everforest theme configurations across multiple tools
-- New .serena directory for AI analysis caching
-- Multiple temporary fish configuration files (everforest themes)
-- Enhanced git configuration with delta and everforest theming

.serena/memories/shellcheck_issues.md

@@ -1,62 +0,0 @@
-# ShellCheck Issues Analysis
-
-## Critical Shell Script Problems
-
-### Missing Shebangs (SC2148)
-
-Multiple shell scripts missing proper shebang lines:
-
-- `tools/antidote/tests/` - Test scripts
-- `config/vim/*/test/lib/common.sh` - FZF test libraries
-- `config/tmux/plugins/*/scripts/helpers.sh` - Plugin helper scripts
-- Various submodule scripts
-
-### Syntax Errors (SC1036, SC1088, SC1073)
-
-- `config/vim/fzf/test/lib/common.sh` - Invalid ERB template syntax
-- `config/cheat/cheatsheets/tldr/` - Markdown files incorrectly parsed as shell
-- `tmux-sessionist/scripts/list_sessions.sh` - Brace parsing errors
-
-### Variable Assignment Issues (SC1007, SC2155)
-
-- `config/vim/extra/fzf/test/lib/common.sh` - Incorrect empty variable assignments
-- Multiple tmux plugin scripts - Declare and assign should be separate
-
-### Quoting Problems (SC2086, SC2006)
-
-- Unquoted variable expansions in tmux plugin scripts
-- Legacy backtick usage instead of $(...) syntax
-- Missing quotes around variable expansions
-
-## Third-Party Code Issues
-
-### Submodule Problems
-
-Most shellcheck errors are in **third-party submodules**:
-
-- `tools/antidote/` - Zsh plugin manager
-- `config/tmux/plugins/` - Tmux plugins
-- `config/vim/extra/fzf/` - FZF integration
-- `config/cheat/cheatsheets/tldr/` - Cheat sheet collection
-
-### Recommendation
-
-- These should be **excluded from shellcheck** via configuration
-- Focus linting only on **project-owned scripts**
-- Add shellcheck ignore patterns for submodule directories
-
-## Project-Owned Script Issues
-
-### Main Scripts Status
-
-- `install` - ✅ Clean (no shellcheck errors)
-- `test-all.sh` - ✅ Clean
-- `add-submodules.sh` - ✅ Clean
-- `config/shared.sh` - ✅ Clean
-- Scripts in `local/bin/` - ✅ Mostly clean
-
-### Minor Issues Found
-
-- Some scripts could benefit from stricter quoting
-- Consistent shebang usage across all scripts
-- Consider adding `set -euo pipefail` to more scripts

.serena/memories/suggested_commands.md

@@ -1,122 +0,0 @@
-# Essential Commands for .dotfiles Development
-
-## Installation & Setup
-
-```bash
-# Initial setup - install linting tools and dependencies
-yarn install
-
-# Install/update all dotfiles configurations
-./install
-
-# Update git submodules (multiple approaches)
-git submodule update --remote --merge
-git submodule update --init --recursive --force
-bash add-submodules.sh
-```
-
-## Development Commands
-
-```bash
-# Linting (run all linters - ALWAYS fix all issues)
-yarn lint
-
-# Individual linting commands
-yarn lint:markdown    # Markdownlint
-yarn lint:prettier    # Prettier check
-yarn lint:ec          # EditorConfig checker
-
-# Auto-fixing (use these BEFORE manual linting)
-yarn fix              # Fix all format issues
-yarn fix:markdown     # Fix markdown formatting
-yarn fix:prettier     # Fix prettier formatting
-
-# Testing
-yarn test             # Run all Bats tests
-bash test-all.sh      # Alternative test runner
-```
-
-## Pre-commit Hooks (Comprehensive)
-
-Current pre-commit configuration includes:
-
-- **Security**: detect-aws-credentials, detect-private-key
-- **File integrity**: check-case-conflict, check-merge-conflict, check-symlinks
-- **Shell scripts**: shellcheck, shfmt (formatting)
-- **YAML/JSON**: yamllint, check-yaml, check-toml, pretty-format-json
-- **Markdown**: markdownlint with auto-fix
-- **Lua**: stylua formatting for Neovim configs
-- **Fish**: fish_syntax, fish_indent for shell configs
-- **GitHub Actions**: actionlint validation
-- **Renovate**: renovate-config-validator
-- **General**: trailing-whitespace, end-of-file-fixer, mixed-line-ending
-
-```bash
-# Run pre-commit manually
-pre-commit run --all-files
-```
-
-## Version Management
-
-```bash
-# Check current versions (all managed by mise)
-node --version        # mise (.nvmrc via idiomatic_version_file)
-go version           # mise (.go-version)
-python --version     # mise (.python-version)
-mise ls              # List all installed tool versions
-```
-
-## System Utilities (Darwin-specific)
-
-```bash
-# Modern CLI tools available
-ls                   # aliased to eza with icons and git info
-grep                 # aliased to grep --color
-fd pattern           # modern find alternative
-rg pattern           # ripgrep for text search
-bat file            # modern cat with syntax highlighting
-```
-
-## Project-specific Scripts (100+ available)
-
-```bash
-# Dotfiles management
-bash local/bin/dfm install all
-
-# Git utilities
-git-dirty            # Check for dirty git repositories
-git-fsck-dirs        # Run fsck on git directories
-git-update-dirs      # Update multiple git directories
-
-# Development utilities
-x-pr-comments <pr>   # Analyze GitHub PR comments (NEW)
-x-set-php-aliases    # Generate PHP version aliases
-x-env-list          # List environment variables
-x-open-ports        # Check open network ports
-
-# Backup utilities
-x-backup-folder     # Backup directories
-x-backup-mysql-with-prefix  # MySQL backup with prefix
-```
-
-## Configuration Management
-
-```bash
-# Load shell configurations
-source config/shared.sh      # Cross-shell compatibility functions
-source x-set-php-aliases     # PHP version management
-
-# Host-specific configurations
-# Automatically applied: hosts/{hostname}/
-```
-
-## Quality Assurance (CRITICAL)
-
-**All linting errors are BLOCKING and must be fixed:**
-
-- EditorConfig violations are considered blocking errors
-- ShellCheck warnings must be addressed
-- Prettier formatting must be consistent
-- Markdownlint rules must be followed
-- NEVER use --no-verify with git operations
-- ALWAYS run autofixers before manual intervention

.serena/memories/task_completion_checklist.md

@@ -1,115 +0,0 @@
-# Task Completion Checklist
-
-When completing any development task in this dotfiles repository, follow this
-checklist to ensure compliance with project standards.
-
-## Required Steps (BLOCKING)
-
-### 1. Code Quality Checks
-
-```bash
-# Run all linting tools - MUST PASS with zero errors
-yarn lint
-
-# Individual checks if needed:
-yarn lint:markdown    # Markdownlint validation
-yarn lint:prettier    # Prettier formatting check
-yarn lint:ec          # EditorConfig compliance verification
-```
-
-### 2. Shell Script Validation (if applicable)
-
-```bash
-# All shell scripts must pass shellcheck without warnings
-find . -path ./node_modules -prune -o -name '*.sh' -print0 | xargs -0 shellcheck
-
-# For individual scripts:
-shellcheck path/to/script.sh
-```
-
-### 3. Testing Infrastructure
-
-```bash
-# Run all tests - MUST PASS completely
-yarn test
-# OR alternative runner
-bash test-all.sh
-
-# For specific test categories:
-# Bats tests in tests/ directory
-# Individual script functionality tests
-```
-
-### 4. EditorConfig Compliance (CRITICAL)
-
-- **BLOCKING REQUIREMENT**: EditorConfig violations prevent completion
-- All code must follow `.editorconfig` rules exactly:
-  - UTF-8 charset
-  - LF line endings
-  - Final newline required
-  - Trailing whitespace removal
-  - Language-specific indentation (2-space default, 4-space for Fish)
-- Use autofixers before attempting manual fixes
-- Never modify linting configuration to bypass errors
-
-## Auto-fixing Protocol
-
-```bash
-# ALWAYS run auto-fixers first, in this order:
-yarn fix              # Fix all auto-fixable issues
-yarn fix:markdown     # Fix markdown formatting violations
-yarn fix:prettier     # Fix code formatting issues
-
-# Verify fixes applied correctly:
-yarn lint             # Should show reduced error count
-```
-
-## Pre-commit Hook Integration
-
-Current pre-commit configuration enforces:
-
-- Security checks (credentials, private keys)
-- Shell script validation (shellcheck, shfmt)
-- Markdown formatting (markdownlint with auto-fix)
-- YAML/JSON validation and formatting
-- Lua formatting (stylua for Neovim configs)
-- Fish shell syntax validation
-- GitHub Actions validation (actionlint)
-- Renovate configuration validation
-
-## Memory File Maintenance
-
-When updating memory files:
-
-1. Follow markdown best practices (blank lines around headings/lists)
-2. Specify language for fenced code blocks
-3. Ensure final newline exists
-4. Respect line length limits (120 chars for markdown)
-5. Use proper heading hierarchy
-
-## Critical Success Criteria
-
-✅ **REQUIRED FOR TASK COMPLETION:**
-
-- `yarn lint` exits with code 0 (no errors)
-- `yarn test` passes all test suites
-- EditorConfig compliance verified
-- No trailing whitespace or missing final newlines
-- Shell scripts have proper shebangs and pass shellcheck
-- All temporary/cache files cleaned up
-
-❌ **BLOCKING ISSUES:**
-
-- Any linting errors or warnings
-- EditorConfig violations of any kind
-- Test failures or incomplete test coverage
-- Use of `--no-verify` flag with git operations
-- Modified linting configurations to bypass errors
-
-## Quality Assurance Notes
-
-- **Use `which command`** to get full paths in scripts
-- **Prefer modern tools**: `rg` over `grep`, `fd` over `find`, `bat` over `cat`
-- **Test cross-shell compatibility**: bash, zsh, fish
-- **Validate host-specific configurations** don't break general setup
-- **Document any new utilities** in `local/bin/README.md`

.serena/project.yml

@@ -1,160 +0,0 @@
----
-# whether to use the project's gitignore file to ignore files
-# Added on 2025-04-07
-ignore_all_files_in_gitignore: true
-# list of additional paths to ignore
-# same syntax as gitignore, so you can use * and **
-# Was previously called `ignored_dirs`, please update your config if you are using that.
-# Added (renamed) on 2025-04-07
-ignored_paths:
-  - "*.swp"
-  - "*.tmp"
-  - "*.tmp.*"
-  - ".DS_Store"
-  - ".git/**"
-  - /config/cheat/cheatsheets/community/**
-  - /config/cheat/cheatsheets/pure-bash-bible/**
-  - /config/cheat/cheatsheets/tldr/**
-  - /config/fish/cheatsheets/community/**
-  - /config/fzf/**
-  - /config/nvim/snippets/**
-  - /config/nvim/spell/**
-  - /config/op/plugins/**
-  - /config/tmux/plugins/**
-  - /config/vim/extra/**
-  - /config/zsh/completions/**
-  - /config/zsh/plugins/**
-  - /local/man/fzf
-  - /local/share/fonts
-  - /tools/antidote
-  - /tools/dotbot
-  - /tools/dotbot-*/**
-  - node_modules/**
-
-# whether the project is in read-only mode
-# If set to true, all editing tools will be disabled and attempts to use them will result in an error
-# Added on 2025-04-18
-read_only: false
-
-# list of tool names to exclude. We recommend not excluding any tools, see the readme for more details.
-# Below is the complete list of tools for convenience.
-# To make sure you have the latest list of tools, and to view their descriptions,
-# execute `uv run scripts/print_tool_overview.py`.
-#
-#  * `activate_project`: Activates a project by name.
-#  * `check_onboarding_performed`: Checks whether project onboarding was already performed.
-#  * `create_text_file`: Creates/overwrites a file in the project directory.
-#  * `delete_lines`: Deletes a range of lines within a file.
-#  * `delete_memory`: Deletes a memory from Serena's project-specific memory store.
-#  * `execute_shell_command`: Executes a shell command.
-#  * `find_referencing_code_snippets`: Finds code snippets in which the symbol at the given location is referenced.
-#  * `find_referencing_symbols`: Finds symbols that reference the symbol at the given location (optionally filtered by type).
-#  * `find_symbol`: Performs a global (or local) search for symbols with/containing a given name/substring (optionally filtered by type).
-#  * `get_current_config`: Prints the current configuration of the agent, including the active and available projects, tools, contexts, and modes.
-#  * `get_symbols_overview`: Gets an overview of the top-level symbols defined in a given file.
-#  * `initial_instructions`: Gets the initial instructions for the current project.
-#     Should only be used in settings where the system prompt cannot be set,
-#     e.g. in clients you have no control over, like Claude Desktop.
-#  * `insert_after_symbol`: Inserts content after the end of the definition of a given symbol.
-#  * `insert_at_line`: Inserts content at a given line in a file.
-#  * `insert_before_symbol`: Inserts content before the beginning of the definition of a given symbol.
-#  * `list_dir`: Lists files and directories in the given directory (optionally with recursion).
-#  * `list_memories`: Lists memories in Serena's project-specific memory store.
-#  * `onboarding`: Performs onboarding (identifying the project structure and essential tasks, e.g. for testing or building).
-#  * `prepare_for_new_conversation`: Provides instructions for preparing for a new conversation (in order to continue with the necessary context).
-#  * `read_file`: Reads a file within the project directory.
-#  * `read_memory`: Reads the memory with the given name from Serena's project-specific memory store.
-#  * `remove_project`: Removes a project from the Serena configuration.
-#  * `replace_lines`: Replaces a range of lines within a file with new content.
-#  * `replace_symbol_body`: Replaces the full definition of a symbol.
-#  * `restart_language_server`: Restarts the language server, may be necessary when edits not through Serena happen.
-#  * `search_for_pattern`: Performs a search for a pattern in the project.
-#  * `summarize_changes`: Provides instructions for summarizing the changes made to the codebase.
-#  * `switch_modes`: Activates modes by providing a list of their names
-#  * `think_about_collected_information`: Thinking tool for pondering the completeness of collected information.
-#  * `think_about_task_adherence`: Thinking tool for determining whether the agent is still on track with the current task.
-#  * `think_about_whether_you_are_done`: Thinking tool for determining whether the task is truly completed.
-#  * `write_memory`: Writes a named memory (for future reference) to Serena's project-specific memory store.
-excluded_tools: []
-
-# initial prompt for the project. It will always be given to the LLM upon activating the project
-# (contrary to the memories, which are loaded on demand).
-initial_prompt: ""
-# the name by which the project can be referenced within Serena
-project_name: ".dotfiles"
-
-# list of tools to include that would otherwise be disabled (particularly optional tools that are disabled by default).
-# This extends the existing inclusions (e.g. from the global configuration).
-included_optional_tools: []
-
-# fixed set of tools to use as the base tool set (if non-empty), replacing Serena's default set of tools.
-# This cannot be combined with non-empty excluded_tools or included_optional_tools.
-fixed_tools: []
-
-# list of mode names to that are always to be included in the set of active modes
-# The full set of modes to be activated is base_modes + default_modes.
-# If the setting is undefined, the base_modes from the global configuration (serena_config.yml) apply.
-# Otherwise, this setting overrides the global configuration.
-# Set this to [] to disable base modes for this project.
-# Set this to a list of mode names to always include the respective modes for this project.
-base_modes:
-
-# list of mode names that are to be activated by default.
-# The full set of modes to be activated is base_modes + default_modes.
-# If the setting is undefined, the default_modes from the global configuration (serena_config.yml) apply.
-# Otherwise, this overrides the setting from the global configuration (serena_config.yml).
-# This setting can, in turn, be overridden by CLI parameters (--mode).
-default_modes:
-
-# time budget (seconds) per tool call for the retrieval of additional symbol information
-# such as docstrings or parameter information.
-# This overrides the corresponding setting in the global configuration; see the documentation there.
-# If null or missing, use the setting from the global configuration.
-symbol_info_budget:
-
-# The language backend to use for this project.
-# If not set, the global setting from serena_config.yml is used.
-# Valid values: LSP, JetBrains
-# Note: the backend is fixed at startup. If a project with a different backend
-# is activated post-init, an error will be returned.
-language_backend:
-
-# line ending convention to use when writing source files.
-# Possible values: unset (use global setting), "lf", "crlf", or "native" (platform default)
-# This does not affect Serena's own files (e.g. memories and configuration files), which always use native line endings.
-line_ending:
-
-# list of regex patterns which, when matched, mark a memory entry as read‑only.
-# Extends the list from the global configuration, merging the two lists.
-read_only_memory_patterns: []
-
-# the encoding used by text files in the project
-# For a list of possible encodings, see https://docs.python.org/3.11/library/codecs.html#standard-encodings
-encoding: utf-8
-
-# list of languages for which language servers are started; choose from:
-#   al                  bash                clojure             cpp                 csharp
-#   csharp_omnisharp    dart                elixir              elm                 erlang
-#   fortran             fsharp              go                  groovy              haskell
-#   java                julia               kotlin              lua                 markdown
-#   matlab              nix                 pascal              perl                php
-#   php_phpactor        powershell          python              python_jedi         r
-#   rego                ruby                ruby_solargraph     rust                scala
-#   swift               terraform           toml                typescript          typescript_vts
-#   vue                 yaml                zig
-#   (This list may be outdated. For the current list, see values of Language enum here:
-#   https://github.com/oraios/serena/blob/main/src/solidlsp/ls_config.py
-#   For some languages, there are alternative language servers, e.g. csharp_omnisharp, ruby_solargraph.)
-# Note:
-#   - For C, use cpp
-#   - For JavaScript, use typescript
-#   - For Free Pascal/Lazarus, use pascal
-# Special requirements:
-#   Some languages require additional setup/installations.
-#   See here for details: https://oraios.github.io/serena/01-about/020_programming-languages.html#language-servers
-# When using multiple languages, the first language server that supports a given file will be used for that file.
-# The first language is the default language and the respective language server will be used as a fallback.
-# Note that when using the JetBrains backend, language servers are not used and this list is correspondingly ignored.
-languages:
-  - bash
-  - lua

.sonarlint/connectedMode.json

@@ -1,5 +0,0 @@
-{
-  "sonarCloudOrganization": "ivuorinen",
-  "projectKey": "ivuorinen_dotfiles",
-  "region": "EU"
-}

.yamlignore

@@ -1,16 +0,0 @@
-# vim: ft=gitignore
-.mypy_cache/*
-Brewfile.lock.json
-config/cheat/cheatsheets/community
-config/cheat/cheatsheets/tldr
-config/fzf/*
-config/nvim/*
-config/op/plugins/used_plugins/*
-config/tmux/plugins/*
-config/vim/plugged/*
-config/zsh/*
-lazy-lock.json
-local/bin/antigen.zsh
-local/bin/asdf
-tools/antidote/*
-tools/dotbot*

.yamllint.yml

@@ -1,21 +0,0 @@
----
-extends: default
-
-ignore: |
-  node_modules
-  tools
-  config/tmux/plugins
-
-rules:
-  empty-lines:
-    level: warning
-    max: 1
-  line-length:
-    max: 200
-    level: warning
-  truthy:
-    check-keys: false
-  comments:
-    min-spaces-from-content: 1
-  trailing-spaces:
-    level: warning

.yarnrc.yml

@@ -1 +0,0 @@
-nodeLinker: node-modules

CLAUDE.md

@@ -1,277 +0,0 @@
-# CLAUDE.md
-
-This file provides guidance to Claude Code (claude.ai/code)
-when working with code in this repository.
-
-## Repository Overview
-
-Personal dotfiles repository for Ismo Vuorinen.
-Uses **Dotbot** (not GNU Stow) to symlink configuration files into place.
-The directory layout follows the XDG Base Directory Specification.
-
-## Directory Layout and Linking
-
-| Source              | Destination       | Notes                                     |
-|---------------------|-------------------|-------------------------------------------|
-| `base/*`            | `~/.*`            | Home-level dotfiles (`.` added by Dotbot) |
-| `config/*`          | `~/.config/`      | Application configurations                |
-| `local/bin/*`       | `~/.local/bin/`   | Helper scripts and utilities              |
-| `local/share/*`     | `~/.local/share/` | Data files                                |
-| `local/man/**`      | `~/.local/man/`   | Manual pages                              |
-| `ssh/*`             | `~/.ssh/`         | SSH configuration (mode 0600)             |
-| `hosts/<hostname>/` | Overlays          | Host-specific overrides                   |
-
-Installation: `./install` runs Dotbot with `install.conf.yaml`,
-then applies `hosts/<hostname>/install.conf.yaml` if it exists.
-
-## Commands
-
-```bash
-# Install dependencies (required before lint/test)
-yarn install
-
-# Linting
-yarn lint              # Run biome + prettier + editorconfig-checker
-yarn lint:biome        # Biome only
-yarn lint:ec           # EditorConfig checker only
-yarn lint:md-table     # Markdown table formatting check
-yarn fix:md-table      # Auto-fix markdown tables
-
-# Formatting
-yarn fix:biome         # Autofix with biome (JS/TS/JSON/MD)
-yarn fix:prettier      # Autofix with prettier (YAML)
-yarn format            # Format with biome
-yarn format:yaml       # Format YAML files with prettier
-
-# Testing (Bats - Bash Automated Testing System)
-yarn test              # Run all tests in tests/
-# Run a single test file:
-./node_modules/.bin/bats tests/dfm.bats
-
-# Shell linting
-shellcheck <script>    # Lint shell scripts
-
-# Tooling maintenance
-npx @biomejs/biome migrate --write  # Update biome schema version
-```
-
-## Pre-commit Hooks
-
-Configured in `.pre-commit-config.yaml`: shellcheck, shfmt, biome,
-yamllint, prettier, actionlint, stylua, fish_syntax/fish_indent, ruff.
-Run `pre-commit run --all-files` to check everything.
-
-## Commit Convention
-
-Semantic Commit messages: `type(scope): summary`
-(e.g., `fix(tmux): correct prefix binding`).
-Enforced by commitlint extending `@ivuorinen/commitlint-config`.
-
-## Architecture
-
-### Shell Configuration Chain
-
-Both `base/bashrc` and `base/zshrc` source `config/shared.sh`,
-which loads:
-- `config/exports` — environment variables, XDG dirs, PATH
-- `config/alias` — shell aliases
-
-Zsh additionally uses **antidote** (in `tools/antidote/`)
-for plugin management and **oh-my-posh** for the prompt.
-
-### msgr — Messaging Helper
-
-`local/bin/msgr` provides colored output functions (`msgr msg`,
-`msgr run`, `msgr yay`, `msgr err`, `msgr warn`). Sourced by `dfm`
-and most scripts in `local/bin/`.
-
-### dfm — Dotfiles Manager
-
-`local/bin/dfm` is the main management script. Key commands:
-- `dfm install all` — install everything in tiered stages
-- `dfm brew install` / `dfm brew update` — Homebrew management
-- `dfm apt upkeep` — APT package maintenance (Debian/Ubuntu)
-- `dfm dotfiles fmt` / `dfm dotfiles shfmt` — format configs/scripts
-- `dfm helpers <name>` — inspect aliases, colors, env, functions, path
-- `dfm docs all` — regenerate documentation under `docs/`
-- `dfm check arch` / `dfm check host` — system info
-- `dfm scripts` — run scripts from `scripts/` (discovered via `@description` tags)
-- `dfm tests` — test visualization helpers
-
-### mise — Unified Tool Manager
-
-`config/mise/config.toml` manages language runtimes (Node LTS, Python 3,
-Go latest, Rust stable) and CLI tools (fd, ripgrep, eza, neovim, delta,
-zoxide, etc.). Activated via `eval "$(mise activate bash)"` in
-`config/exports`. Run `mise install` after adding new tools.
-
-### Submodules
-
-External dependencies are git submodules (Dotbot, plugins,
-tmux plugins, cheatsheets, antidote).
-Managed by `add-submodules.sh`. All set to `ignore = dirty`.
-Updated automatically via GitHub Actions on a schedule.
-
-### Host-specific Configs
-
-Machine-specific overrides live in `hosts/<hostname>/`
-with their own `base/`, `config/`, and `install.conf.yaml`.
-These are layered on top of the global config during installation.
-
-## Code Style
-
-- **EditorConfig**: 2-space indent, UTF-8, LF line endings.
-  See `.editorconfig` for per-filetype overrides
-  (4-space for PHP/fish, tabs for git config).
-- **Shell scripts**: Must have a shebang or
-  `# shellcheck shell=bash` directive.
-  Follow shfmt settings in `.editorconfig`
-  (2-space indent, `binary_next_line`,
-  `switch_case_indent`, `space_redirects`, `function_next_line`).
-- **Lua** (neovim config): Formatted with stylua (`stylua.toml`),
-  90-char line length.
-- **JSON/JS/TS/Markdown**: Formatted with Biome (`biome.json`),
-  80-char width (Markdown uses 120-char override).
-- **YAML**: Formatted with Prettier (`.prettierrc.json`),
-  validated with yamllint (`.yamllint.yml`).
-
-## ShellCheck Disabled Rules
-
-Defined in `.shellcheckrc`:
-SC2039 (POSIX `local`), SC2166 (`-o` in test),
-SC2154 (unassigned variables), SC1091 (source following),
-SC2174 (mkdir -p -m), SC2016 (single-quote expressions).
-
-## Gotchas
-
-- **POSIX scripts**: `x-ssh-audit`, `x-codeql`, `x-until-error`,
-  `x-until-success`, `x-ssl-expiry-date` use `/bin/sh`.
-  Validate with `sh -n`, not `bash -n`.
-- **Vendor file**: `local/bin/fzf-tmux` is vendored from
-  junegunn/fzf — do not modify.
-- **Fish config**: `config/fish/` has its own config chain
-  (`config.fish`, `exports.fish`, `alias.fish`) plus 60+ functions.
-- **gh CLI config**: `config/gh/hosts.yml` is managed by `gh` CLI
-  and excluded from prettier (see `.prettierignore`).
-- **Python**: Two scripts (`x-compare-versions.py`,
-  `x-git-largest-files.py`) linted by Ruff (config in `pyproject.toml`).
-- **Fish secrets**: `config/fish/secrets.d/*.fish` files are auto-sourced
-  by `exports.fish`. Copy `github.fish.example` → `github.fish` for local
-  secrets. These files are gitignored; only `*.example` and `README.md`
-  are tracked.
-
-## Claude Code Configuration
-
-- **Hooks** (`.claude/settings.json`):
-  - *PreToolUse*: Blocks edits to `fzf-tmux`, `yarn.lock`,
-    `.yarn/`, submodule paths, and real secrets.d files
-  - *PostToolUse*: Auto-formats files by extension
-    (shfmt, fish_indent, stylua, biome, prettier)
-  - *PostToolUse*: Validates Dotbot `install.conf.yaml`
-    after edits
-  - *PostToolUse*: Warns on formatter/linter config changes
-  - *Stop*: Runs `yarn lint` gate before finishing
-- **Skills** (`.claude/skills/`):
-  - `shell-validate`: Auto-validates shell scripts
-    (syntax + shellcheck)
-  - `fish-validate`: Auto-validates fish scripts
-    (syntax + fish_indent)
-  - `lua-format`: Auto-formats Lua files with stylua
-  - `yaml-validate`: Auto-validates YAML files
-    (yamllint + actionlint)
-  - `dotbot-validate`: Validates Dotbot install.conf.yaml
-  - `new-script`: Scaffolds helper scripts in local/bin/
-  - `new-fish-function`: Scaffolds fish functions
-  - `host-override`: Creates host-specific config overlays
-- **Subagents** (`.claude/agents/`):
-  - `code-reviewer`: Reviews shell/fish/lua changes
-- **Plugins** (required):
-  - `context-mode`: Context window protection — must be
-    installed for this repo. See routing rules below.
-  - `context7`: Live documentation lookup
-
-## Package Manager
-
-Yarn (v4+) is the package manager. Do not use npm.
-
-# context-mode — MANDATORY routing rules
-
-You have context-mode MCP tools available. These rules are NOT optional —
-they protect your context window from flooding. A single unrouted command
-can dump 56 KB into context and waste the entire session.
-
-## BLOCKED commands — do NOT attempt these
-
-### curl / wget — BLOCKED
-Any Bash command containing `curl` or `wget` is intercepted and replaced with an error message. Do NOT retry.
-Instead use:
-- `ctx_fetch_and_index(url, source)` to fetch and index web pages
-- `ctx_execute(language: "javascript", code: "const r = await fetch(...)")` to run HTTP calls in sandbox
-
-### Inline HTTP — BLOCKED
-Any Bash command containing `fetch('http`, `requests.get(`,
-`requests.post(`, `http.get(`, or `http.request(` is intercepted
-and replaced with an error message. Do NOT retry with Bash.
-Instead use:
-- `ctx_execute(language, code)` to run HTTP calls in sandbox — only stdout enters context
-
-### WebFetch — BLOCKED
-WebFetch calls are denied entirely. The URL is extracted and you are told to use `ctx_fetch_and_index` instead.
-Instead use:
-- `ctx_fetch_and_index(url, source)` then `ctx_search(queries)` to query the indexed content
-
-## REDIRECTED tools — use sandbox equivalents
-
-### Bash (>20 lines output)
-Bash is ONLY for: `git`, `mkdir`, `rm`, `mv`, `cd`, `ls`, `npm install`, `pip install`, and other short-output commands.
-For everything else, use:
-- `ctx_batch_execute(commands, queries)` — run multiple commands + search in ONE call
-- `ctx_execute(language: "shell", code: "...")` — run in sandbox, only stdout enters context
-
-### Read (for analysis)
-If you are reading a file to **Edit** it → Read is correct (Edit needs content in context).
-If you are reading to **analyze, explore, or summarize** →
-use `ctx_execute_file(path, language, code)` instead. Only your
-printed summary enters context. The raw file stays in the sandbox.
-
-### Grep (large results)
-Grep results can flood context.
-Use `ctx_execute(language: "shell", code: "grep ...")` to run
-searches in sandbox. Only your printed summary enters context.
-
-## Tool selection hierarchy
-
-1. **GATHER**: `ctx_batch_execute(commands, queries)` — Primary
-  tool. Runs all commands, auto-indexes output, returns search
-  results. ONE call replaces 30+ individual calls.
-2. **FOLLOW-UP**: `ctx_search(queries: ["q1", "q2", ...])` —
-  Query indexed content. Pass ALL questions as array in ONE call.
-3. **PROCESSING**: `ctx_execute(language, code)` |
-  `ctx_execute_file(path, language, code)` — Sandbox execution.
-  Only stdout enters context.
-4. **WEB**: `ctx_fetch_and_index(url, source)` then
-  `ctx_search(queries)` — Fetch, chunk, index, query.
-  Raw HTML never enters context.
-5. **INDEX**: `ctx_index(content, source)` — Store content in FTS5 knowledge base for later search.
-
-## Subagent routing
-
-When spawning subagents (Agent/Task tool), the routing block is
-automatically injected into their prompt. Bash-type subagents are
-upgraded to general-purpose so they have access to MCP tools.
-You do NOT need to manually instruct subagents about context-mode.
-
-## Output constraints
-
-- Keep responses under 500 words.
-- Write artifacts (code, configs, PRDs) to FILES — never return
-  them as inline text. Return only: file path + 1-line description.
-- When indexing content, use descriptive source labels so others can `ctx_search(source: "label")` later.
-
-## ctx commands
-
-| Command       | Action                                                                                |
-|---------------|---------------------------------------------------------------------------------------|
-| `ctx stats`   | Call the `ctx_stats` MCP tool and display the full output verbatim                    |
-| `ctx doctor`  | Call the `ctx_doctor` MCP tool, run the returned shell command, display as checklist  |
-| `ctx upgrade` | Call the `ctx_upgrade` MCP tool, run the returned shell command, display as checklist |

add-submodules.sh

@@ -5,8 +5,12 @@ git submodule sync --recursive
 # dotbot and plugins
 git submodule add --name dotbot \
   -f https://github.com/anishathalye/dotbot.git tools/dotbot
+git submodule add --name dotbot-brew \
+  -f https://github.com/wren/dotbot-brew.git tools/dotbot-brew
 git submodule add --name dotbot-include \
   -f https://gitlab.com/gnfzdz/dotbot-include.git tools/dotbot-include
+git submodule add --name dotbot-pip \
+  -f https://github.com/sobolevn/dotbot-pip.git tools/dotbot-pip
 
 # other repos
 git submodule add --name cheat-community \
@@ -20,18 +24,24 @@ git submodule add --name antidote \
 # tmux plugin manager and plugins
 git submodule add --name tmux/tmux-continuum \
   -f https://github.com/tmux-plugins/tmux-continuum config/tmux/plugins/tmux-continuum
+git submodule add --name tmux/tmux-mode-indicator \
+  -f https://github.com/MunifTanjim/tmux-mode-indicator.git config/tmux/plugins/tmux-mode-indicator
 git submodule add --name tmux/tmux-resurrect \
   -f https://github.com/tmux-plugins/tmux-resurrect.git config/tmux/plugins/tmux-resurrect
+git submodule add --name tmux/tmux-sensible \
+  -f https://github.com/tmux-plugins/tmux-sensible.git config/tmux/plugins/tmux-sensible
 git submodule add --name tmux/tmux-sessionist \
   -f https://github.com/tmux-plugins/tmux-sessionist.git config/tmux/plugins/tmux-sessionist
 git submodule add --name tmux/tmux-suspend \
   -f https://github.com/MunifTanjim/tmux-suspend.git config/tmux/plugins/tmux-suspend
+git submodule add --name tmux/tmux-window-name \
+  -f https://github.com/ivuorinen/tmux-window-name.git config/tmux/plugins/tmux-window-name
+git submodule add --name tmux/tmux-yank \
+  -f https://github.com/tmux-plugins/tmux-yank.git config/tmux/plugins/tmux-yank
 git submodule add --name tmux/tmux-current-pane-hostname \
   -f https://github.com/soyuka/tmux-current-pane-hostname.git config/tmux/plugins/tmux-current-pane-hostname
 git submodule add --name tmux/tmux-dark-notify \
-  -f https://github.com/ivuorinen/tmux-dark-notify.git config/tmux/plugins/tmux-dark-notify
-git submodule add --name tmux/catppuccin \
-  -f https://github.com/catppuccin/tmux.git config/tmux/plugins/catppuccin
+  -f https://github.com/erikw/tmux-dark-notify.git config/tmux/plugins/tmux-dark-notify
 
 # Takes submodules and sets them to ignore all changes
 for MODULE in $(git config --file .gitmodules --get-regexp path | awk '{ print $2 }'); do
@@ -42,70 +52,21 @@ done
 # Mark certain repositories shallow
 git config -f .gitmodules submodule.antidote.shallow true
 
-# Log a message using msgr if available, else echo
-_log()
-{
-  local msg="$1"
-  if command -v msgr > /dev/null 2>&1; then
-    msgr run_done "$msg"
-  else
-    echo "  [ok] $msg"
-  fi
-  return 0
-}
-
-# Remove a stale git submodule and clean up references
-remove_old_submodule()
-{
-  local name="$1" path="$2"
-
-  # Remove working tree
-  if [[ -d "$path" ]]; then
-    rm -rf "$path"
-    _log "Removed $path"
-  fi
-
-  # Remove stale git index entry
-  git rm --cached "$path" 2> /dev/null || true
-
-  # Remove .git/config section keyed by path
-  git config --remove-section "submodule.$path" 2> /dev/null || true
-
-  # Skip name-based cleanup if no submodule name provided
-  [[ -z "$name" ]] && return 0
-
-  # Remove .git/config section keyed by name
-  git config --remove-section "submodule.$name" 2> /dev/null || true
-
-  # Remove .git/modules/<name>/ cached repository
-  if [[ -d ".git/modules/$name" ]]; then
-    rm -rf ".git/modules/$name"
-    _log "Removed .git/modules/$name"
-  fi
-}
-
-# remove old submodules (name:path pairs)
-old_submodules=(
-  "tmux/tpm:config/tmux/plugins/tpm"
-  ":config/tmux/plugins/tmux"
-  "tmux/tmux-menus:config/tmux/plugins/tmux-menus"
-  "dotbot-crontab:tools/dotbot-crontab"
-  "dotbot-snap:tools/dotbot-snap"
-  "tmux/tmux-window-name:config/tmux/plugins/tmux-window-name"
-  "tmux/tmux-sensible:config/tmux/plugins/tmux-sensible"
-  "tmux/tmux-mode-indicator:config/tmux/plugins/tmux-mode-indicator"
-  "tmux/tmux-yank:config/tmux/plugins/tmux-yank"
-  ":config/tmux/plugins/tmux-fzf-url"
-  "nvim-kickstart:config/nvim-kickstart"
-  "asdf:local/bin/asdf"
-  "asdf:local/asdf"
-  "dotbot-asdf:tools/dotbot-asdf"
-  "dotbot-pip:tools/dotbot-pip"
-  "dotbot-brew:tools/dotbot-brew"
+# remove old submodules
+folders=(
+  "config/tmux/plugins/tpm"
+  "config/tmux/plugins/tmux"
+  "config/tmux/plugins/tmux-menus"
+  "tools/dotbot-crontab"
+  "tools/dotbot-snap"
+  "config/nvim-kickstart"
+  "local/bin/asdf"
+  "local/asdf"
+  "tools/dotbot-asdf"
 )
 
-for entry in "${old_submodules[@]}"; do
-  name="${entry%%:*}"
-  path="${entry#*:}"
-  remove_old_submodule "$name" "$path"
+for folder in "${folders[@]}"; do
+  [ -d "$folder" ] \
+    && rm -rf "$folder" \
+    && msgr run_done "Removed old submodule $folder"
 done

base/bashrc

@@ -2,17 +2,20 @@
 # shellcheck shell=bash
 
 export DOTFILES="$HOME/.dotfiles"
-# Minimal PATH for x-have and utilities; full PATH set in shared.sh/exports
 export PATH="$HOME/.local/bin:$DOTFILES/local/bin:$PATH"
 export SHARED_SCRIPTS_SOURCED=0
 
 source "$DOTFILES/config/shared.sh"
 
+if [ -n "${GHOSTTY_RESOURCES_DIR}" ]; then
+  builtin source "${GHOSTTY_RESOURCES_DIR}/shell-integration/bash/ghostty.bash"
+fi
+
 # shellcheck source=../config/fzf/fzf.bash
 [ -f "${DOTFILES}/config/fzf/fzf.bash" ] &&
   source "${DOTFILES}/config/fzf/fzf.bash"
 
-# Import ssh keys in keychain (macOS-specific -A flag, silently fails on Linux)
+# Import ssh keys in keychain
 ssh-add -A 2>/dev/null
 
 x-have antidot && {
@@ -22,3 +25,6 @@ x-have antidot && {
 PROMPT_DIRTRIM=3
 PROMPT_COMMAND='PS1_CMD1=$(git branch --show-current 2>/dev/null)'
 PS1='\[\e[95m\]\u\[\e[0m\]@\[\e[38;5;22;2m\]\h\[\e[0m\] \[\e[38;5;33m\]\w\[\e[0m\] \[\e[92;2m\]${PS1_CMD1}\n\[\e[39m\]➜\[\e[0m\] '
+
+# Added by LM Studio CLI (lms)
+export PATH="$PATH:$HOME/.lmstudio/bin"

base/envrc

@@ -0,0 +1 @@
+use node

base/gitprofile

@@ -20,16 +20,6 @@
         "value": "Ismo Vuorinen"
       }
     ],
-    "masf": [
-      {
-        "key": "user.email",
-        "value": "ismo@masf.fi"
-      },
-      {
-        "key": "user.name",
-        "value": "Ismo Vuorinen"
-      }
-    ],
     "work": [
       {
         "key": "user.email",

base/hammerspoon/.luacheckrc

@@ -1,15 +0,0 @@
---
--- These globals can be set and accessed:
---
-globals = {
-  "rawrequire",
-}
-
---
--- These globals can only be accessed:
---
-read_globals = {
-  "hs",
-  "ls",
-  "spoon",
-}

base/hammerspoon/init.lua

@@ -1,205 +0,0 @@
--- ╭─────────────────────────────────────────────────────────╮
--- │                 Hammerspoon config file                 │
--- ╰─────────────────────────────────────────────────────────╯
--- init.lua — Pure Hammerspoon window controls
--- Converted from skhdrc logic; expanded with per‑display grids,
--- app rules with groups, wrap‑around focus, cross‑display moves,
--- and overlay/notification toggles.
--- Author: Ismo Vuorinen (ivuorinen)
-
---------------------------------------------------
--- Caps Lock as Meh key (Shift+Control+Alt)
---------------------------------------------------
--- Prerequisites:
--- 1. Go to System Settings → Keyboard → Keyboard Shortcuts → Modifier Keys
--- 2. Set Caps Lock to "No Action" (you mentioned you already did this)
--- 3. Install Karabiner-Elements: brew install --cask karabiner-elements
--- 4. Open Karabiner-Elements, go to "Simple Modifications"
--- 5. Add: caps_lock → f18
---
--- Then you can use F18 as your Meh key in Hammerspoon:
-local f18 = hs.hotkey.modal.new()
-
--- Capture F18 key press/release
-hs.hotkey.bind({}, 'F18', function()
-  f18:enter()
-end, function()
-  f18:exit()
-end)
-
--- Meh (F18/Caps Lock) key bindings for window management
--- These provide quick access to common window operations
-
--- Helper function to get focused window
-local function W()
-  return hs.window.focusedWindow()
-end
-
--- Window positioning: thirds (U/I/O)
-f18:bind({}, 'u', function()
-  local w = W()
-  if w then
-    w:moveToUnit({ x = 0, y = 0, w = 1 / 3, h = 1 }, 0)
-  end
-end)
-f18:bind({}, 'i', function()
-  local w = W()
-  if w then
-    w:moveToUnit({ x = 1 / 3, y = 0, w = 1 / 3, h = 1 }, 0)
-  end
-end)
-f18:bind({}, 'o', function()
-  local w = W()
-  if w then
-    w:moveToUnit({ x = 2 / 3, y = 0, w = 1 / 3, h = 1 }, 0)
-  end
-end)
-
--- Window positioning: half width, full height (Y)
-f18:bind({}, 'y', function()
-  local w = W()
-  if w then
-    w:moveToUnit({ x = 0, y = 0, w = 0.5, h = 1 }, 0)
-  end
-end)
-
--- Cycle through all windows (H/L)
--- We need to maintain state to properly cycle through all windows
-local windowCycleIndex = 1
-local windowCycleList = {}
-local lastCycleTime = 0
-
-local function getWindowCycleList()
-  local currentTime = hs.timer.secondsSinceEpoch()
-  -- Reset if more than 2 seconds have passed since last cycle
-  if currentTime - lastCycleTime > 2 then
-    windowCycleIndex = 1
-    windowCycleList = hs.window.orderedWindows()
-  end
-  lastCycleTime = currentTime
-  return windowCycleList
-end
-
-f18:bind({}, 'h', function()
-  local windows = getWindowCycleList()
-  if #windows <= 1 then
-    return
-  end
-
-  -- Cycle backward
-  windowCycleIndex = windowCycleIndex - 1
-  if windowCycleIndex < 1 then
-    windowCycleIndex = #windows
-  end
-
-  windows[windowCycleIndex]:focus()
-end)
-
-f18:bind({}, 'l', function()
-  local windows = getWindowCycleList()
-  if #windows <= 1 then
-    return
-  end
-
-  -- Cycle forward
-  windowCycleIndex = windowCycleIndex + 1
-  if windowCycleIndex > #windows then
-    windowCycleIndex = 1
-  end
-
-  windows[windowCycleIndex]:focus()
-end)
-
--- Window sizing: maximize (Up/J) and center (Down)
-f18:bind({}, 'up', function()
-  local w = W()
-  if w then
-    w:maximize(0)
-  end
-end)
-f18:bind({}, 'j', function()
-  local w = W()
-  if w then
-    w:maximize(0)
-  end
-end)
-f18:bind({}, 'down', function()
-  local w = W()
-  if not w then
-    return
-  end
-  local f = w:frame()
-  local sf = w:screen():frame()
-  if f.w < sf.w * 0.95 then
-    w:maximize(0)
-  else
-    local ww, hh = math.floor(sf.w * 0.5), math.floor(sf.h * 0.9)
-    local xx = sf.x + math.floor((sf.w - ww) / 2)
-    local yy = sf.y + math.floor((sf.h - hh) / 2)
-    w:setFrame({ x = xx, y = yy, w = ww, h = hh }, 0)
-  end
-end)
-f18:bind({}, 'k', function()
-  local w = W()
-  if w then
-    local sf = w:screen():frame()
-    local ww, hh = math.floor(sf.w * 0.9), math.floor(sf.h * 0.9)
-    local xx = sf.x + math.floor((sf.w - ww) / 2)
-    local yy = sf.y + math.floor((sf.h - hh) / 2)
-    w:setFrame({ x = xx, y = yy, w = ww, h = hh }, 0)
-  end
-end)
-
--- Move to next/previous screen (. and ,)
-f18:bind({}, '.', function()
-  local w = W()
-  if w then
-    local s = w:screen()
-    local ns = s:toEast() or s:toWest()
-    if ns then
-      w:moveToScreen(ns, true, true, 0)
-    end
-  end
-end)
-f18:bind({}, ',', function()
-  local w = W()
-  if w then
-    local s = w:screen()
-    local ps = s:toWest() or s:toEast()
-    if ps then
-      w:moveToScreen(ps, true, true, 0)
-    end
-  end
-end)
-
--- Window positioning: halves (Left/Right arrows)
-f18:bind({}, 'left', function()
-  local w = W()
-  if w then
-    w:moveToUnit(hs.layout.left50, 0)
-  end
-end)
-f18:bind({}, 'right', function()
-  local w = W()
-  if w then
-    w:moveToUnit(hs.layout.right50, 0)
-  end
-end)
-
--- Paste from clipboard with Meh + V
-f18:bind({}, 'v', function()
-  hs.eventtap.keyStrokes(hs.pasteboard.getContents())
-end)
-
--- Paste 1Password secret with Meh + P
-f18:bind({}, 'p', function()
-  local output, status =
-    hs.execute('op read "op://Svea/3hzhctmvovbwlgulv7mgy25rf4/login-input"', true)
-  if status then
-    hs.eventtap.keyStrokes(output:gsub('%s+$', '')) -- trim trailing whitespace
-  else
-    hs.alert.show '1Password CLI error'
-  end
-end)
-
--- require 'generate_emmylua'

base/huskyrc

@@ -0,0 +1,4 @@
+#!/bin/env bash
+
+[ -z "$NVM_DIR" ] && export NVM_DIR="$HOME/.config/nvm"
+[ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh" # This loads nvm

base/plan

@@ -12,3 +12,5 @@
                    ~-.__|      /_ - ~ ^|      /- _      `..-'   f: f:
                         |     /        |     /     ~-.     `-. _||_||_
                         |_____|        |_____|         ~ - . _ _ _ _ _>
+
+

base/shellcheckrc

@@ -4,3 +4,4 @@
 # paths in source statements (since 0.8.0).
 external-sources=true
 includeAllWorkspaceSymbols=true
+

base/zshrc

@@ -7,13 +7,18 @@
 autoload -U promptinit; promptinit
 
 export DOTFILES="$HOME/.dotfiles"
-# Minimal PATH for x-have and utilities; full PATH set in shared.sh/exports
-export PATH="$HOME/.local/bin:$DOTFILES/local/bin:$PATH"
+LOCAL_SHARE="$HOME/.local/share"
+export PATH="$HOME/.local/bin:$DOTFILES/local/bin:$LOCAL_SHARE/nvim/mason/bin:$LOCAL_SHARE/bob/nvim-bin:$LOCAL_SHARE/cargo/bin:/opt/homebrew/bin:/usr/local/bin:$PATH"
 export SHARED_SCRIPTS_SOURCED=0
 
 source "$DOTFILES/config/shared.sh"
 
-# zsh completions directory (ZSH_CUSTOM_COMPLETION_PATH set in shared.sh)
+# zsh completions directory
+[ -z "$ZSH_COMPLETIONS" ] && export ZSH_COMPLETIONS="$XDG_CONFIG_HOME/zsh/completion"
+
+# Add zsh completions to FPATH, compinit will be called later
+FPATH="$ZSH_COMPLETIONS:$FPATH"
+
 ZSH_COMPDUMP="$XDG_CACHE_HOME/zsh/zcompdump-${SHORT_HOST}-${ZSH_VERSION}"
 
 source "$DOTFILES/config/zsh/antidote.zsh"
@@ -28,13 +33,33 @@ source_fzf_config()
   fi
 }
 
+# Function to set up tmux window name plugin if tmux is active
+setup_tmux_window_name_plugin()
+{
+  if [[ -n "$TMUX" ]]; then
+    local tmux_window_name_plugin="$TMUX_PLUGINS/tmux-window-name/scripts/rename_session_windows.py"
+    if [[ -f "$tmux_window_name_plugin" ]]; then
+      tmux_window_name()
+      {
+        ($tmux_window_name_plugin &)
+      }
+      add-zsh-hook chpwd tmux_window_name
+      tmux_window_name
+    fi
+  fi
+}
+
 source_fzf_config
+setup_tmux_window_name_plugin
 x-have antidot && eval "$(antidot init)"
 
 autoload -Uz compinit bashcompinit
-compinit -d "$ZSH_COMPDUMP"
+compinit -d $ZSH_COMPDUMP
 bashcompinit
 
 # To customize prompt, run `p10k configure` or edit ~/.p10k.zsh.
 export P10K_CONFIG="$DOTFILES/config/zsh/p10k.zsh"
 [[ ! -f "$P10K_CONFIG" ]] || source "$P10K_CONFIG"
+
+# Added by LM Studio CLI (lms)
+export PATH="$PATH:$HOME/.lmstudio/bin"

biome.json

@@ -1,104 +0,0 @@
-{
-  "$schema": "https://biomejs.dev/schemas/2.4.7/schema.json",
-  "vcs": {
-    "enabled": true,
-    "clientKind": "git",
-    "useIgnoreFile": true,
-    "defaultBranch": "main"
-  },
-  "files": {
-    "ignoreUnknown": true,
-    "includes": [
-      "**",
-      "!!**/.mypy_cache",
-      "!!**/Brewfile.lock.json",
-      "!!**/base/plan",
-      "!!**/config/cheat/cheatsheets/community",
-      "!!**/config/cheat/cheatsheets/tldr",
-      "!!**/config/fzf",
-      "!!**/config/nvim",
-      "!!**/config/op/plugins/used_plugins",
-      "!!**/config/tmux/plugins",
-      "!!**/config/zsh",
-      "!!**/config/karabiner",
-      "!!**/config/vim",
-      "!!**/lazy-lock.json",
-      "!!**/local/bin/antigen.zsh",
-      "!!**/local/bin/asdf",
-      "!!**/tools/antidote",
-      "!!**/tools/dotbot",
-      "!!**/node_modules"
-    ]
-  },
-  "formatter": {
-    "enabled": true,
-    "formatWithErrors": false,
-    "indentStyle": "space",
-    "indentWidth": 2,
-    "lineEnding": "lf",
-    "lineWidth": 80
-  },
-  "linter": {
-    "enabled": true,
-    "rules": {
-      "recommended": true,
-      "correctness": {
-        "noUnusedVariables": "warn",
-        "noUnusedImports": "warn"
-      },
-      "style": {
-        "useConst": "warn",
-        "useTemplate": "warn"
-      },
-      "suspicious": {
-        "noExplicitAny": "warn",
-        "noConsole": "off"
-      }
-    }
-  },
-  "javascript": {
-    "formatter": {
-      "enabled": true,
-      "quoteStyle": "single",
-      "jsxQuoteStyle": "double",
-      "trailingCommas": "all",
-      "semicolons": "asNeeded",
-      "arrowParentheses": "always",
-      "bracketSpacing": true,
-      "bracketSameLine": false,
-      "quoteProperties": "asNeeded",
-      "indentStyle": "space",
-      "indentWidth": 2
-    }
-  },
-  "json": {
-    "parser": {
-      "allowComments": true,
-      "allowTrailingCommas": false
-    },
-    "formatter": {
-      "enabled": true,
-      "indentStyle": "space",
-      "indentWidth": 2,
-      "lineWidth": 80
-    }
-  },
-  "overrides": [
-    {
-      "includes": ["*.md", "*.mdx"],
-      "formatter": {
-        "enabled": true,
-        "lineWidth": 120
-      }
-    },
-    {
-      "includes": ["package.json"],
-      "json": {
-        "formatter": {
-          "enabled": true,
-          "indentWidth": 2
-        }
-      }
-    }
-  ]
-}

config/aerospace/aerospace.toml

@@ -0,0 +1,251 @@
+# Start AeroSpace at login
+start-at-login = false
+
+# Normalizations. See: https://nikitabobko.github.io/AeroSpace/guide#normalization
+enable-normalization-flatten-containers = true
+enable-normalization-opposite-orientation-for-nested-containers = true
+
+# See: https://nikitabobko.github.io/AeroSpace/guide#layouts
+# The 'accordion-padding' specifies the size of accordion padding
+# You can set 0 to disable the padding feature
+accordion-padding = 10
+
+# Possible values: tiles|accordion
+default-root-container-layout = 'tiles'
+
+# Possible values: horizontal|vertical|auto
+# 'auto' means: wide monitor (anything wider than high) gets horizontal orientation,
+#               tall monitor (anything higher than wide) gets vertical orientation
+default-root-container-orientation = 'auto'
+
+# Mouse follows focus when focused monitor changes
+# Drop it from your config, if you don't like this behavior
+# See https://nikitabobko.github.io/AeroSpace/guide#on-focus-changed-callbacks
+# See https://nikitabobko.github.io/AeroSpace/commands#move-mouse
+# Fallback value (if you omit the key): on-focused-monitor-changed = []
+on-focused-monitor-changed = ['move-mouse monitor-lazy-center']
+
+# You can effectively turn off macOS "Hide application" (cmd-h) feature by toggling this flag
+# Useful if you don't use this macOS feature, but accidentally hit cmd-h or cmd-alt-h key
+# Also see: https://nikitabobko.github.io/AeroSpace/goodness#disable-hide-app
+automatically-unhide-macos-hidden-apps = true
+
+# [[on-window-detected]]
+# if.app-id = 'com.apple.systempreferences'
+# if.app-name-regex-substring = 'settings'
+# if.window-title-regex-substring = 'substring'
+# if.workspace = 'workspace-name'
+# if.during-aerospace-startup = true
+# check-further-callbacks = true
+# run = ['layout floating', 'move-node-to-workspace S']  # The callback itself
+
+[[on-window-detected]]
+if.app-name-regex-substring = 'settings' # All settings
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.apple.systempreferences' # macOS System Preferences
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.1password.1password' # 1Password
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'org.ferdium.ferdium-app' # Ferdium, has WhatsApp etc.
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.jetbrains.PhpStorm' # PhpStorm
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.apple.finder' # Finder
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.apple.Preview' # Preview
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.apple.mail' # Mail
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.DanPristupov.Fork' # Fork
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.flexibits.fantastical2.mac' # Fantastical
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'org.whispersystems.signal-desktop' # Signal
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.tidal.desktop' # TIDAL
+run = ['layout floating', 'move-node-to-workspace 2'] # Float and move to workspace 2
+
+[[on-window-detected]]
+if.app-id = 'com.apple.TV' # Apple TV app
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.setapp.DesktopClient' # Setapp
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.electron.dockerdesktop' # Docker Desktop
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.tinyspeck.slackmacgap' # Slack
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'md.obsidia' # Obsidian
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.todoist.mac.Todoist' # Todoist
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.apple.backup.launcher' # TimeMachine
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.philipyoungg.session-setapp' # Session app (Setapp)
+run = ['layout floating']
+
+[[on-window-detected]]
+if.app-id = 'com.microsoft.rdc.macos' # Remote Desktop
+run = ['layout floating']
+
+# Possible values: (qwerty|dvorak)
+# See https://nikitabobko.github.io/AeroSpace/guide#key-mapping
+[key-mapping]
+preset = 'qwerty'
+
+# Gaps between windows (inner-*) and between monitor edges (outer-*).
+# Possible values:
+# - Constant:     gaps.outer.top = 8
+# - Per monitor:  gaps.outer.top = [{ monitor.main = 16 }, { monitor."some-pattern" = 32 }, 24]
+#                 In this example, 24 is a default value when there is no match.
+#                 Monitor pattern is the same as for 'workspace-to-monitor-force-assignment'.
+#                 See: https://nikitabobko.github.io/AeroSpace/guide#assign-workspaces-to-monitors
+[gaps]
+inner.horizontal = 5
+inner.vertical =   5
+outer.top = [{ monitor.'^built-in retina display$' = 0 }, 0]
+outer.right =      0
+outer.bottom =     0
+outer.left =       0
+
+# 'main' binding mode declaration
+# See: https://nikitabobko.github.io/AeroSpace/guide#binding-modes
+# 'main' binding mode must be always presented
+# Fallback value (if you omit the key): mode.main.binding = {}
+[mode.main.binding]
+
+cmd-h = [] # Disable "hide application"
+cmd-alt-h = [] # Disable "hide others"
+
+# All possible keys:
+# - Letters.        a, b, c, ..., z
+# - Numbers.        0, 1, 2, ..., 9
+# - Keypad numbers. keypad0, keypad1, keypad2, ..., keypad9
+# - F-keys.         f1, f2, ..., f20
+# - Special keys.   minus, equal, period, comma, slash, backslash, quote, semicolon, backtick,
+#                   leftSquareBracket, rightSquareBracket, space, enter, esc, backspace, tab
+# - Keypad special. keypadClear, keypadDecimalMark, keypadDivide, keypadEnter, keypadEqual,
+#                   keypadMinus, keypadMultiply, keypadPlus
+# - Arrows.         left, down, up, right
+
+# All possible modifiers: cmd, alt, ctrl, shift
+
+# All possible commands: https://nikitabobko.github.io/AeroSpace/commands
+
+# See: https://nikitabobko.github.io/AeroSpace/commands#exec-and-forget
+# You can uncomment the following lines to open up terminal with alt + enter shortcut (like in i3)
+# alt-enter = '''exec-and-forget osascript -e '
+# tell application "Terminal"
+#     do script
+#     activate
+# end tell'
+# '''
+
+# alt-cmd-shift-f = 'fullscreen'
+# alt-shift-f = 'layout floating'
+# alt-shift-tab = 'move-workspace-to-monitor --wrap-around next'
+
+# See: https://nikitabobko.github.io/AeroSpace/commands#focus
+alt-h = 'focus left'
+alt-j = 'focus down'
+alt-k = 'focus up'
+alt-l = 'focus right'
+
+# See: https://nikitabobko.github.io/AeroSpace/commands#workspace
+alt-shift-1 = 'workspace 1' # Main
+alt-shift-2 = 'workspace 2' # Media
+ctrl-shift-1 = 'move-node-to-workspace 1' # Move node to Main
+ctrl-shift-2 = 'move-node-to-workspace 2' # Move node to Media
+
+alt-shift-tab = 'workspace-back-and-forth' # Switch between workspaces
+ctrl-shift-tab = 'move-workspace-to-monitor --wrap-around prev'
+
+# See: https://nikitabobko.github.io/AeroSpace/commands#mode
+# See: https://nikitabobko.github.io/AeroSpace/guide#binding-modes
+alt-a = 'mode apps'
+alt-s = 'mode service'
+alt-m = 'mode move'
+
+# ╭──────────────────────────────────────────────────────────╮
+# │                          alt-m                           │
+# ╰──────────────────────────────────────────────────────────╯
+[mode.move.binding]
+esc = ['reload-config', 'mode main']
+# See: https://nikitabobko.github.io/AeroSpace/commands#move-node-to-workspace
+1 = ['move-node-to-workspace 1 --focus-follows-window']
+2 = ['move-node-to-workspace 2 --focus-follows-window']
+# See: https://nikitabobko.github.io/AeroSpace/commands#move
+h = 'move left'
+j = 'move down'
+k = 'move up'
+l = 'move right'
+# See: https://nikitabobko.github.io/AeroSpace/commands#join-with
+shift-h = 'join-with left'
+shift-j = 'join-with down'
+shift-k = 'join-with up'
+shift-l = 'join-with right'
+# https://nikitabobko.github.io/AeroSpace/commands#resize
+ctrl-h = 'resize smart -70'
+ctrl-l = 'resize smart +70'
+shift-left = 'resize smart +70'
+shift-right = 'resize smart -70'
+# https://nikitabobko.github.io/AeroSpace/commands#flatten-workspace-tree
+r = ['flatten-workspace-tree', 'mode main'] # reset layout
+
+# ╭──────────────────────────────────────────────────────────╮
+# │                          alt-a                           │
+# ╰──────────────────────────────────────────────────────────╯
+[mode.apps.binding]
+esc = ['reload-config', 'mode main']
+b = ['exec-and-forget open -a /Applications/Brave Browser.app', 'mode main'] # Browser
+c = ['exec-and-forget open -a /Applications/Ferdium.app', 'mode main'] # Chat
+g = ['exec-and-forget open -a /Applications/Ghostty.app', 'mode main'] # Ghostty
+o = ['exec-and-forget open -a /Applications/Obsidian.app', 'mode main'] # Obsidian
+s = ['exec-and-forget open -a /Applications/Slack.app', 'mode main'] # Slack
+t = ['exec-and-forget open -a /Applications/TIDAL.app', 'mode main'] # Tidal
+w = ['exec-and-forget open -a /Applications/WezTerm.app', 'mode main'] # WezTerm
+
+# ╭──────────────────────────────────────────────────────────╮
+# │                          alt-s                           │
+# ╰──────────────────────────────────────────────────────────╯
+[mode.service.binding]
+esc = ['reload-config', 'mode main'] # reload config
+r = ['flatten-workspace-tree', 'mode main'] # reset layout
+# See: https://nikitabobko.github.io/AeroSpace/commands#layout
+f = ['layout floating tiling', 'mode main'] # Toggle between floating and tiling layout
+backspace = ['close-all-windows-but-current', 'mode main']

config/alacritty/alacritty.toml

@@ -1,3 +1,8 @@
+import = [
+  # Default to night if the copied one doesn't exist.
+  "~/.dotfiles/config/alacritty/theme-night.toml",
+  "~/.config/alacritty/theme-active.toml"
+]
 
 [env]
 TERM = "xterm-256color"
@@ -45,10 +50,3 @@ lines = 75
 [window.padding]
 x = 5
 y = 5
-
-[general]
-import = [
-  # Default to night if the copied one doesn't exist.
-  "~/.dotfiles/config/alacritty/theme-night.toml",
-  "~/.config/alacritty/theme-active.toml"
-]

config/alias

@@ -7,6 +7,8 @@ x-have eza && {
   alias ls="eza -h -s=type --git --icons --group-directories-first"
 }
 
+alias vim='vim -u "$XDG_CONFIG_HOME/vim/vimrc"'
+
 # Easier navigation: .., ..., ....
 alias ..="cd .."
 alias ...="cd ../.."
@@ -33,8 +35,6 @@ alias .c='cd $HOME/Code'
 alias .d='cd $DOTFILES'
 alias .l='cd $HOME/.local'
 alias .o='cd $HOME/Code/ivuorinen/obsidian/'
-alias .s='cd $HOME/Code/s'
-alias .p='cd $HOME/Code/ivuorinen'
 
 # Shortcuts for listing
 alias ll="ls -la"

config/amethyst/amethyst.yml

@@ -93,13 +93,13 @@ expand-main:
 # Note that not all layouts respond to this command.
 increase-main:
   mod: mod1
-  key: ","
+  key: ','
 
 # Decrease the number of windows in the main pane.
 # Note that not all layouts respond to this command.
 decrease-main:
   mod: mod1
-  key: "."
+  key: '.'
 
 # General purpose command for custom layouts.
 # Functionality is layout-dependent.
@@ -180,7 +180,7 @@ swap-main:
 # Move focus to the n-th screen in the list; e.g.,
 # focus-screen-3 will move mouse focus to the 3rd screen.
 # Note that the main window in the given screen will be focused.
-# focus-screen-n:
+#focus-screen-n:
 # focus-screen-<screen-number>:
 #   mod: mod1
 #   key: y
@@ -197,12 +197,12 @@ swap-main:
 #   key: i
 
 # Select tall layout
-# select-tall-layout:
-#  mod: mod1
-#  key: a
+#select-tall-layout:
+# mod: mod1
+# key: a
 
 # Select wide layout
-# select-wide-layout:
+#select-wide-layout:
 #  mod: mod1
 #  key: s
 

config/amethyst/layouts/almost-maximize.js

@@ -6,19 +6,21 @@
  *
  * @param {Object} windows - All windows in the current space.
  * @param {Object} screenFrame - The frame of the current screen.
+ * @param {Object} state - The state of the current space.
+ * @param {Object} extendedFrames - The frames of the windows in the current space.
  * @return {Object} - The frames for the windows in the current space.
  */
 function layout() {
   return {
     name: 'Almost Maximize',
-    getFrameAssignments: (windows, screenFrame) => {
+    getFrameAssignments: (windows, screenFrame, state, extendedFrames) => {
       const width = screenFrame.width * 0.95
       const height = screenFrame.height * 0.95
       const x = (screenFrame.width - width) / 2
       const y = (screenFrame.height - height) / 2
       const windowFrames = {}
 
-      windows.forEach((window) => {
+      windows.forEach(window => {
         windowFrames[window.id] = {
           Y: screenFrame.y + y,
           x: screenFrame.x + x,
@@ -31,5 +33,3 @@ function layout() {
     },
   }
 }
-
-module.exports = layout()

config/aqua/aqua.yaml

@@ -0,0 +1,15 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/aquaproj/aqua/main/json-schema/aqua-yaml.json
+# aqua - Declarative CLI Version Manager
+# https://aquaproj.github.io/
+# checksum:
+#   enabled: true
+#   require_checksum: true
+#   supported_envs:
+#   - all
+registries:
+  - type: standard
+    ref: v4.346.0 # renovate: depName=aquaproj/aqua-registry
+packages:
+  - name: cli/cli
+    version: 'v2.69.0'

config/asdf/asdfrc

@@ -0,0 +1,5 @@
+# See the docs for explanations: https://asdf-vm.com/manage/configuration.html
+
+legacy_version_file=yes
+use_release_candidates=no
+concurrency=auto

config/asdf/cargo-packages

@@ -0,0 +1,25 @@
+// A cargo subcommand for checking and applying
+// updates to installed executables
+cargo-update
+// Cargo cache management utility
+cargo-cache
+// An incremental parsing system for programming tools
+tree-sitter-cli
+// a subprocess caching utility
+bkt
+// a structural diff that understands syntax
+difftastic
+// A simple, fast and user-friendly alternative to 'find'
+fd-find
+// recursively searches directories for a
+// regex pattern while respecting your gitignore
+ripgrep
+// A version manager for neovim
+bob-nvim
+// bottom, btm - A cross-platform graphical process/system monitor with
+// a customizable interface and a multitude of features.
+bottom
+// A modern alternative to ls
+eza
+// Tmux Sessionizer: A tool for opening git repositories as tmux sessions
+tmux-sessionizer

config/asdf/gem-packages

@@ -0,0 +1 @@
+bundler

config/asdf/golang-packages

@@ -0,0 +1,23 @@
+// These are golang packages I use,
+// so they should be available with all versions
+
+// Aqua is a package manager like asdf, or Brew
+github.com/aquaproj/aqua/v2/cmd/aqua@latest
+// Git Profile allows you to switch between user profiles in git repos
+github.com/dotzero/git-profile@v1.4.0
+// An extensible command line tool or library to format yaml files.
+github.com/google/yamlfmt/cmd/yamlfmt@v0.13.0
+// Parsing HTML at the command line
+github.com/ericchiang/pup@v0.4.0
+// HTML to Markdown converter
+github.com/suntong/html2md@v1.5.0
+// cheat allows you to create and view interactive cheatsheets on the cli.
+github.com/cheat/cheat/cmd/cheat@4.4.2
+// Render markdown on the CLI, with pizzazz! 💅
+github.com/charmbracelet/glow@v1.5.1
+// Static checker for GitHub Actions workflow files
+github.com/rhysd/actionlint/cmd/actionlint@v1.7.1
+// Cleans up your $HOME from those pesky dotfiles
+github.com/doron-cohen/antidot@v0.6.3
+// FZF is a general-purpose command-line fuzzy finder.
+github.com/junegunn/fzf@latest

config/asdf/npm-packages

@@ -0,0 +1,7 @@
+blade-formatter
+corepack
+editorconfig-checker
+github-release-notes
+neovim
+npm
+stylelint-lsp

config/asdf/plugin-versions

@@ -0,0 +1,20 @@
+1password-cli         https://github.com/NeoHsu/asdf-1password-cli.git            f5d5aab
+age                   https://github.com/threkk/asdf-age.git                      396bdf6
+asdf-plugin-manager   https://github.com/asdf-community/asdf-plugin-manager.git   b5862c1
+direnv                https://github.com/asdf-community/asdf-direnv.git           6ff3dbe
+dotenv-linter         https://github.com/wesleimp/asdf-dotenv-linter.git          1369f53
+editorconfig-checker  https://github.com/gabitchov/asdf-editorconfig-checker.git  585c1d5
+fd                    https://gitlab.com/wt0f/asdf-fd.git                         17d56e0
+github-cli            https://github.com/bartlomiejdanek/asdf-github-cli.git      e0605b7
+golang                https://github.com/asdf-community/asdf-golang.git           e2527a3
+hadolint              https://github.com/devlincashman/asdf-hadolint.git          c8eb88b
+kubectl               https://github.com/asdf-community/asdf-kubectl.git          2fb3b57
+pre-commit            https://github.com/jonathanmorley/asdf-pre-commit.git       26bfc42
+ripgrep               https://gitlab.com/wt0f/asdf-ripgrep.git                    e836665
+rust                  https://github.com/code-lever/asdf-rust.git                 95acf4f
+shellcheck            https://github.com/luizm/asdf-shellcheck.git                66200ff
+shfmt                 https://github.com/luizm/asdf-shfmt.git                     a42c5ff
+terragrunt            https://github.com/ohmer/asdf-terragrunt.git                29f2935
+tf-summarize          https://github.com/adamcrews/asdf-tf-summarize.git          880ad26
+yamllint              https://github.com/ericcornelissen/asdf-yamllint.git        e4cfb17
+yq                    https://github.com/sudermanjr/asdf-yq.git                   772992f

config/asdf/python-packages

@@ -0,0 +1,4 @@
+ansible
+pipenv
+neovim
+libtmux

config/cheat/cheatsheets/personal/printf

@@ -69,3 +69,5 @@ Available format modifiers are:
 '.          For decimal conversions, applies the thousands grouping
             separator to the integer portion of the output according
             to the current LC_NUMERIC file.
+
+

config/dircolors

@@ -56,11 +56,11 @@ TERM xterm*
 RESET 0 # reset to "normal" color
 DIR 01;34 # directory
 LINK 01;36 # symbolic link. (If you set this to 'target' instead of a
-# numerical value, the color is as for the file pointed to.)
-MULTIHARDLINK 00  # regular file with more than one link
-FIFO 40;33  # pipe
-SOCK 01;35  # socket
-DOOR 01;35  # door
+ # numerical value, the color is as for the file pointed to.)
+MULTIHARDLINK 00 # regular file with more than one link
+FIFO 40;33 # pipe
+SOCK 01;35 # socket
+DOOR 01;35 # door
 BLK 40;33;01 # block device driver
 CHR 40;33;01 # character device driver
 ORPHAN 40;31;01 # symlink to nonexistent file, or non-stat'able file ...

config/direnv/direnv.toml

@@ -0,0 +1,13 @@
+[global]
+disable_stdin = false
+load_dotenv = true
+hide_env_diff = false
+
+[whitelist]
+prefix = [
+  "~/Code/"
+]
+exact = [
+  "~/.dotfiles/.envrc"
+]
+

config/direnv/lib/use_asdf.sh

@@ -0,0 +1,4 @@
+### Do not edit. This was autogenerated by 'asdf direnv setup' ###
+use_asdf() {
+  source_env "$(asdf direnv envrc "$@")"
+}

config/exports

@@ -4,30 +4,17 @@
 
 # Set XDG directories if not already set
 # https://specifications.freedesktop.org/basedir-spec/basedir-spec-latest.html
-[ -z "${XDG_CONFIG_HOME:-}" ] && export XDG_CONFIG_HOME="$HOME/.config"
-[ -z "${XDG_DATA_HOME:-}" ] && export XDG_DATA_HOME="$HOME/.local/share"
-[ -z "${XDG_CACHE_HOME:-}" ] && export XDG_CACHE_HOME="$HOME/.cache"
-[ -z "${XDG_STATE_HOME:-}" ] && export XDG_STATE_HOME="$HOME/.local/state"
-[ -z "${XDG_BIN_HOME:-}" ] && export XDG_BIN_HOME="$HOME/.local/bin"
-[ -z "${XDG_RUNTIME_DIR:-}" ] && export XDG_RUNTIME_DIR="$HOME/.local/run"
+[ -z "$XDG_CONFIG_HOME" ] && export XDG_CONFIG_HOME="$HOME/.config"
+[ -z "$XDG_DATA_HOME" ] && export XDG_DATA_HOME="$HOME/.local/share"
+[ -z "$XDG_CACHE_HOME" ] && export XDG_CACHE_HOME="$HOME/.cache"
+[ -z "$XDG_STATE_HOME" ] && export XDG_STATE_HOME="$HOME/.local/state"
+[ -z "$XDG_BIN_HOME" ] && export XDG_BIN_HOME="$HOME/.local/bin"
+[ -z "$XDG_RUNTIME_DIR" ] && export XDG_RUNTIME_DIR="$HOME/.local/run"
 
 # if DOTFILES is not set, set it to the default location
-[ -z "${DOTFILES:-}" ] && export DOTFILES="$HOME/.dotfiles"
+[ -z "$DOTFILES" ] && export DOTFILES="$HOME/.dotfiles"
 
-# Editor settings
-[ -z "${EDITOR:-}" ] && export EDITOR="nvim"
-[ -z "${VISUAL:-}" ] && export VISUAL="code"
-
-# Bootstrap: ensure local/bin is on PATH so x-path is available
-PATH="$DOTFILES/local/bin:$PATH"
-# Use x-path to deduplicate PATH entries (only if x-path is available)
-if command -v x-path &> /dev/null; then
-  # shellcheck source=../local/bin/x-path
-  source "$(command -v x-path)"
-  normalize_path_var
-  do_prepend "$XDG_BIN_HOME" "$DOTFILES/local/bin" "/opt/homebrew/bin" "/usr/local/bin"
-fi
-export PATH
+export PATH="$XDG_BIN_HOME:$DOTFILES/local/bin:$XDG_DATA_HOME/bob/nvim-bin:$XDG_DATA_HOME/cargo/bin:/opt/homebrew/bin:/usr/local/bin:$PATH"
 
 if ! command -v msg &> /dev/null; then
   # Function to print messages if VERBOSE is enabled
@@ -163,7 +150,6 @@ commit()
   git commit -a -m "$commitMessage"
 }
 
-# Run Laravel scheduler in a loop
 scheduler()
 {
   while :; do
@@ -296,8 +282,7 @@ export LESSHISTFILE="$XDG_STATE_HOME"/less/history
 export MANPAGER="less -X"
 
 # Always enable colored `grep` output
-# Note: GREP_OPTIONS is deprecated since GNU grep 2.21
-# Color is handled via alias in config/alias
+export GREP_OPTIONS="--color=auto"
 
 # check the window size after each command and, if necessary,
 # update the values of LINES and COLUMNS.
@@ -317,7 +302,7 @@ export ANTIDOTE_PLUGINS="$XDG_CONFIG_HOME/zsh/antidote_plugins"
 # https://docs.ansible.com/ansible/latest/reference_appendices/config.html
 msg "Setting up Ansible configuration"
 export ANSIBLE_HOME="$XDG_CONFIG_HOME/ansible"
-export ANSIBLE_CONFIG="$ANSIBLE_HOME/ansible.cfg"
+export ANSIBLE_CONFIG="$XDG_CONFIG_HOME/ansible.cfg"
 export ANSIBLE_GALAXY_CACHE_DIR="$XDG_CACHE_HOME/ansible/galaxy_cache"
 x-dc "$ANSIBLE_HOME"
 x-dc "$ANSIBLE_GALAXY_CACHE_DIR"
@@ -338,25 +323,10 @@ export AWS_CONFIGURE_OUTPUT=true
 export AWS_CONFIGURE_PROFILE=true
 export AWS_CONFIGURE_PROMPT=true
 export AWS_CONFIGURE_PROMPT_DEFAULT="default"
-export AWS_SESSION_TOKEN_FILE="${XDG_STATE_HOME}/aws/session_token"
-export AWS_CONFIGURE_SESSION=true
-export AWS_CONFIGURE_SESSION_DURATION=7200
-export AWS_CONFIGURE_SESSION_MFA=true
 
-# Mason (nvim package manager)
-msg "Setting up Mason configuration"
-export MASON_HOME="$XDG_DATA_HOME/nvim/mason"
-
-# Neovim environment variables
-msg "Setting up Neovim configuration"
-[ -z "${NVIM_STATE:-}" ] && export NVIM_STATE="$XDG_STATE_HOME/nvim"
-[ -z "${NVIM_CONFIG_HOME:-}" ] && export NVIM_CONFIG_HOME="$XDG_CONFIG_HOME/nvim"
-[ -z "${NVIM_DATA_HOME:-}" ] && export NVIM_DATA_HOME="$XDG_DATA_HOME/nvim"
-[ -z "${NVIM_CACHE_HOME:-}" ] && export NVIM_CACHE_HOME="$XDG_CACHE_HOME/nvim"
-[ -z "${NVIM_LOG_PATH:-}" ] && export NVIM_LOG_PATH="$NVIM_STATE/log"
-[ -z "${NVIM_SESSION_PATH:-}" ] && export NVIM_SESSION_PATH="$NVIM_STATE/session"
-[ -z "${NVIM_SHADA_PATH:-}" ] && export NVIM_SHADA_PATH="$NVIM_STATE/shada"
-[ -z "${NVIM_UNDO_PATH:-}" ] && export NVIM_UNDO_PATH="$NVIM_STATE/undo"
+# bob manages nvim versions
+msg "Setting up bob configuration"
+x-path-prepend "$XDG_DATA_HOME/bob/nvim-bin"
 
 # bkt (shell command caching tool) configuration
 msg "Setting up bkt configuration"
@@ -378,9 +348,11 @@ export COMPOSER_HOME="$XDG_STATE_HOME/composer"
 export COMPOSER_BIN="$COMPOSER_HOME/vendor/bin"
 export PATH="$COMPOSER_BIN:$PATH"
 
-# Yarn
-msg "Setting up Yarn configuration"
-export YARN_GLOBAL_FOLDER="$XDG_DATA_HOME/yarn"
+# direnv, https://direnv.net/
+# https://direnv.net/docs/hook.html
+# Set the hook to show the direnv message in a different color
+# export DIRENV_LOG_FORMAT=$'\033[2mdirenv: %s\033[0m'
+export DIRENV_LOG_FORMAT=
 
 # docker, https://docs.docker.com/engine/reference/commandline/cli/
 msg "Setting up Docker configuration"
@@ -388,11 +360,6 @@ export DOCKER_CONFIG="${XDG_CONFIG_HOME}/docker"
 x-dc "$DOCKER_CONFIG"
 # Docker: Disable snyk ad
 export DOCKER_SCAN_SUGGEST=false
-export DOCKER_HIDE_LEGACY_COMMANDS=true
-
-# direnv
-msg "Setting up direnv configuration"
-export DIRENV_LOG_FORMAT=""
 
 # fzf
 export FZF_BASE="${XDG_CONFIG_HOME}/fzf"
@@ -412,6 +379,13 @@ export GOBIN="$XDG_BIN_HOME"
 # Lando
 export PATH="$HOME/.lando/bin${PATH+:$PATH}" #landopath
 
+# NPM: Add npm packages to path
+msg "Setting up NPM configuration"
+x-have node && {
+  NVM_NODE_BIN_DIR="$(dirname "$(which node)")"
+  export PATH="$NVM_NODE_BIN_DIR:$PATH"
+}
+
 # oh-my-posh (omp) configuration
 msg "Setting up oh-my-posh configuration"
 export OHMYPOSH_CFG="$DOTFILES/config/omp/own.toml"
@@ -421,21 +395,25 @@ msg "Setting up 1Password CLI configuration"
 export OP_CACHE="$XDG_STATE_HOME/1password"
 
 # Python
+#
+# pyenv, python environments
 msg "Setting up Python configuration"
 export WORKON_HOME="$XDG_DATA_HOME/virtualenvs"
+export PYENV_ROOT="$XDG_STATE_HOME/pyenv"
 ## for MichaelAquilina/zsh-autoswitch-virtualenv
 export AUTOSWITCH_VIRTUAL_ENV_DIR="$WORKON_HOME"
+export PATH="$PYENV_ROOT/bin:$PYENV_ROOT/shims:$PATH"
+[[ -d $PYENV_ROOT/bin ]] && export PATH="$PYENV_ROOT/bin:$PATH"
+x-have pyenv && eval "$(pyenv init -)"
 
 # Rust / cargo
 msg "Setting up Rust/Cargo configuration"
-export CARGO_HOME="$XDG_DATA_HOME/cargo"
-export CARGO_BIN_HOME="$XDG_BIN_HOME"
-export RUSTUP_HOME="$XDG_DATA_HOME/rustup"
-export RUST_WITHOUT="clippy,docs,rls"
+export RUST_WITHOUT=rust-docs
 
-# Poetry
-msg "Setting up Poetry configuration"
-export POETRY_HOME="$XDG_DATA_HOME/poetry"
+# screen
+# https://www.gnu.org/software/screen/manual/screen.html
+msg "Setting up screen configuration"
+export SCREENRC="$XDG_CONFIG_HOME/misc/screenrc"
 
 # sonarlint
 # https://www.sonarlint.org/
@@ -464,51 +442,21 @@ export ZSH_TMUX_UNICODE=true
 export ZSH_TMUX_AUTOQUIT=false
 export ZSH_TMUX_DEFAULT_SESSION_NAME=main
 
-# tms (tmux session manager)
-msg "Setting up tms configuration"
-export TMS_CONFIG_FILE="$XDG_CONFIG_HOME/tms/config.toml"
+# tms, https://github.com/jrmoulton/tmux-sessionizer
+export TMS_CONFIG_FILE="${XDG_CONFIG_HOME}/tms/config.toml"
 
 # wakatime, https://github.com/wakatime/wakatime-cli
 msg "Setting up Wakatime configuration"
 export WAKATIME_HOME="$XDG_STATE_HOME/wakatime"
 x-dc "$WAKATIME_HOME"
 
-# LM Studio CLI
-msg "Setting up LM Studio configuration"
-export PATH="$PATH:$HOME/.lmstudio/bin"
-
-# Screen
-msg "Setting up screen configuration"
-export SCREENRC="$XDG_CONFIG_HOME/misc/screenrc"
-
-# Zoxide
-msg "Setting up Zoxide configuration"
-export _ZO_DATA_DIR="$XDG_DATA_HOME/zoxide"
-export _ZO_EXCLUDE_DIRS="$XDG_DATA_HOME"
-
 # Misc
 msg "Setting up miscellaneous configuration"
 export ZSHZ_DATA="$XDG_STATE_HOME/z"
 export CHEAT_USE_FZF=true
 export SQLITE_HISTORY="${XDG_CACHE_HOME}/sqlite_history"
 
-# Additional PATH entries (aligned with fish config)
-[ -d "$XDG_DATA_HOME/mise/shims" ] && export PATH="$XDG_DATA_HOME/mise/shims:$PATH"
-[ -d "$YARN_GLOBAL_FOLDER/bin" ] && export PATH="$PATH:$YARN_GLOBAL_FOLDER/bin"
-[ -d "$MASON_HOME/bin" ] && export PATH="$PATH:$MASON_HOME/bin"
-[ -d "$HOME/.dotnet/tools" ] && export PATH="$PATH:$HOME/.dotnet/tools"
-[ -d "$POETRY_HOME/bin" ] && export PATH="$PATH:$POETRY_HOME/bin"
-[ -d "$HOME/.opencode/bin" ] && export PATH="$PATH:$HOME/.opencode/bin"
-
-# mise — unified tool version manager
-# https://mise.jdx.dev
-if command -v mise &> /dev/null; then
-  eval "$(mise activate bash)"
-fi
-
-if [ -f "$XDG_CONFIG_HOME/exports-secret" ]; then source "$XDG_CONFIG_HOME/exports-secret"; fi
-if [ -f "$XDG_CONFIG_HOME/exports-local" ]; then source "$XDG_CONFIG_HOME/exports-local"; fi
-# shellcheck source=./exports-lakka
-if [ -f "$XDG_CONFIG_HOME/exports-$(hostname)" ]; then source "$XDG_CONFIG_HOME/exports-$(hostname)"; fi
-# shellcheck source=./exports-lakka-secret
-if [ -f "$XDG_CONFIG_HOME/exports-$(hostname)-secret" ]; then source "$XDG_CONFIG_HOME/exports-$(hostname)-secret"; fi
+[ -f "$XDG_CONFIG_HOME/exports-secret" ] && source "$XDG_CONFIG_HOME/exports-secret"
+[ -f "$XDG_CONFIG_HOME/exports-local" ] && source "$XDG_CONFIG_HOME/exports-local"
+[ -f "$XDG_CONFIG_HOME/exports-$(hostname)" ] && source "$XDG_CONFIG_HOME/exports-$(hostname)"
+[ -f "$XDG_CONFIG_HOME/exports-$(hostname)-secret" ] && source "$XDG_CONFIG_HOME/exports-$(hostname)-secret"

config/exports-lakka

@@ -8,6 +8,7 @@ fi
 export PATH="$HOME/.local/go/bin:$PATH"
 
 alias logrotate='/usr/sbin/logrotate -s "$HOME/logs/state"'
+alias nano='nano -wS -$'
 alias gpg=gpg2
 
 ACME_PATH="$HOME/.acme.sh"

config/exports-secret.example

@@ -1,3 +1,5 @@
+#!/usr/bin/env bash
+#
 # This file is secret and wont be added to the git repo.
 
 export GITLAB_API_TOKEN=""

config/fish/alias.fish

@@ -1,20 +1,14 @@
 # Set aliases for fish shell
 
-if type -q nvim
-    alias vim='nvim'
-    alias vi='nvim'
-end
+alias vim='vim -u "$XDG_CONFIG_HOME/vim/vimrc"'
 
 # eza aliases if eza is installed
 if type -q eza >/dev/null
     function eza_git -d "Use eza and its git options if in a git repo"
         if git rev-parse --is-inside-work-tree &>/dev/null
-            eza --group-directories-first --icons=always \
-                --smart-group --git $argv
+            eza --group-directories-first --icons=always --smart-group --git $argv
         else
-            eza --group-directories-first \
-                --icons=always \
-                --smart-group $argv
+            eza --group-directories-first --icons=always --smart-group $argv
         end
     end
 
@@ -33,25 +27,10 @@ if type -q eza >/dev/null
     function l --wraps='eza_git' --description eza
         eza_git $argv
     end
-else
-    function ls --description 'ls (system fallback)'
-        command ls $argv
-    end
-    function ll --description 'ls -lh (system fallback)'
-        command ls -lh $argv
-    end
-    function l --description 'ls (system fallback)'
-        command ls $argv
-    end
-    function lsa --description 'ls -lah (system fallback)'
-        command ls -lah $argv
-    end
 end
 
 # Edit fish alias file
-function .a \
-    --wraps='nvim ~/.dotfiles/config/fish/alias.fish' \
-    --description 'edit alias.fish'
+function .a --wraps='nvim ~/.dotfiles/config/fish/alias.fish' --description 'edit alias.fish'
     nvim ~/.dotfiles/config/fish/alias.fish $argv
 end
 
@@ -76,9 +55,7 @@ function .p --wraps='cd ~/Code/ivuorinen' --description 'cd ~/Code/ivuorinen'
 end
 
 # shortcut to commit with a message
-function commit \
-    --wraps='git commit -a -m "chore: automated commit"' \
-    --description 'commit shortcut'
+function commit --wraps='git commit -a -m "chore: automated commit"' --description 'commit shortcut'
     set -l commitMessage $argv
     git add .
 
@@ -94,8 +71,7 @@ function commit \
     git commit -a -m "$commitMessage"
 end
 
-function configure_tide \
-    --description 'Configure tide with the lean style and my preferences'
+function configure_tide --description 'Configure tide with the lean style and my preferences'
     tide configure \
         --auto \
         --style=Lean \
@@ -108,43 +84,25 @@ function configure_tide \
         --transient=Yes
 end
 
-# Navigation aliases
-abbr --add .. 'cd ..'
-abbr --add ... 'cd ../..'
-abbr --add .... 'cd ../../..'
+# Abbreviations for git
+abbr --add gau git add -u
+abbr --add gaa git add -A
+abbr --add gcv git commit -v
 
-# Interesting folders
-function .b --wraps='cd $XDG_BIN_HOME' --description 'cd $XDG_BIN_HOME'
-    cd $XDG_BIN_HOME $argv
-end
+# Abbreviations for composer
+abbr --add c composer
+abbr --add cu composer update
+abbr --add ci composer install
 
-function .l --wraps='cd ~/.local' --description 'cd ~/.local'
-    cd ~/.local $argv
-end
+# Abbreviations for php artisan
+abbr --add .pa php artisan
+abbr --add .paf php artisan fresh
+abbr --add .pam php artisan migrate
+abbr --add .pams php artisan migrate --seed
+abbr --add .pat php artisan test
 
-function .o --wraps='cd ~/Code/ivuorinen/obsidian/' --description 'cd ~/Code/ivuorinen/obsidian/'
-    cd ~/Code/ivuorinen/obsidian/ $argv
-end
-
-# cd to git root directory
-function cdgr --description 'cd to git root'
-    if git rev-parse --is-inside-work-tree &>/dev/null
-        cd (git rev-parse --show-toplevel); or return $status
-    else
-        echo >&2 "Not in a git repository"
-        return 1
-    end
-end
-
-# Colored grep
-abbr --add grep 'grep --color'
-
-# Date helpers
-alias isodate="date +'%Y-%m-%d'"
-alias x-datetime="date +'%Y-%m-%d %H:%M:%S'"
-alias x-timestamp="date +'%s'"
-
-# Random abbreviations
-if type -q onefetch
-    abbr --add stats onefetch --nerd-fonts --true-color never
-end
+# Abbreviations for npm
+abbr --add .n npm
+abbr --add .nt npm test --if-present
+abbr --add .nb npm run build --if-present
+abbr --add .ns npm run start --if-present

config/fish/completions/app.fish

@@ -0,0 +1,71 @@
+# @halostatue/fish-macos/completions/app.fish:v7.0.1
+
+complete --command app --erase
+
+complete --command app --arguments bundleid \
+    --exclusive --condition __fish_use_subcommand \
+    --description 'Show bundle IDs for macOS apps'
+
+complete --command app --arguments find \
+    --exclusive --condition __fish_use_subcommand \
+    --description 'Find macOS apps by pattern'
+
+complete --command app --arguments frontmost \
+    --exclusive --condition __fish_use_subcommand \
+    --description 'Shows the front-most application'
+
+complete --command app --arguments icon \
+    --exclusive --condition __fish_use_subcommand \
+    --description 'Extracts a MacOS app icon as a png file'
+
+complete --command app --arguments quit \
+    --exclusive --condition __fish_use_subcommand \
+    --description 'Quit macOS apps by pattern'
+
+for subcommand in bundleid find
+    complete --command app --condition '__fish_seen_subcommand_from '$subcommand \
+        --short-option x --long-option exact --description 'Exact matches only'
+
+    complete --command app --condition '__fish_seen_subcommand_from '$subcommand \
+        --short-option a --long-option all --description 'Show all matches'
+
+    complete --command app --condition '__fish_seen_subcommand_from '$subcommand \
+        --short-option q --long-option quiet --description 'Quiet (show no output)'
+
+    complete --command app --condition '__fish_seen_subcommand_from '$subcommand \
+        --short-option h --long-option help --description 'Help for app '$subcommand
+end
+
+complete --command app --condition '__fish_seen_subcommand_from 'bundleid \
+    --short-option s --long-option short --description 'Show only the bundle ID'
+
+complete --command app --condition '__fish_seen_subcommand_from 'frontmost \
+    --short-option b --long-option bundle-id --description 'Shows the app bundle ID'
+complete --command app --condition '__fish_seen_subcommand_from 'frontmost \
+    --short-option p --long-option path --description 'Shows the app path'
+complete --command app --condition '__fish_seen_subcommand_from 'frontmost \
+    --short-option n --long-option name --description 'Shows the app name'
+complete --command app --condition '__fish_seen_subcommand_from 'frontmost \
+    --short-option P --long-option pid --description 'Shows the PID of the app'
+complete --command app --condition '__fish_seen_subcommand_from 'frontmost \
+    --short-option a --long-option all --description 'Shows all details'
+complete --command app --condition '__fish_seen_subcommand_from 'frontmost \
+    --short-option h --long-option help --description 'Help for app 'frontmost
+
+complete --command app --condition '__fish_seen_subcommand_from 'icon \
+    --short-option x --long-option exact --description 'Exact matches only'
+complete --command app --condition '__fish_seen_subcommand_from 'icon \
+    --short-option o --long-option output --description 'Extracts to this file or directory' \
+    --force-files
+complete --command app --condition '__fish_seen_subcommand_from 'icon \
+    --short-option w --long-option width --description 'Uses this pixel width' \
+    --no-files
+complete --command app --condition '__fish_seen_subcommand_from 'icon \
+    --short-option h --long-option help --description 'Help for app 'icon
+
+complete --command app --condition '__fish_seen_subcommand_from 'quit \
+    --short-option x --long-option exact --description 'Exact matches only'
+complete --command app --condition '__fish_seen_subcommand_from 'quit \
+    --short-option r --long-option restart --description 'Restart after quit'
+complete --command app --condition '__fish_seen_subcommand_from 'quit \
+    --short-option h --long-option help --description 'Help for app 'quit

config/fish/completions/aqua.fish

@@ -9,31 +9,31 @@ function __fish_aqua_no_subcommand --description 'Test if there has been any sub
     return 0
 end
 
-complete -c aqua -n __fish_aqua_no_subcommand -f -l log-level -r -d 'log level'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l config -s c -r -d 'configuration file path'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l disable-cosign -d 'Disable Cosign verification'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l disable-slsa -d 'Disable SLSA verification'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l disable-github-artifact-attestation -d 'Disable GitHub Artifact Attestations verification'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l trace -r -d 'trace output file path'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l cpu-profile -r -d 'cpu profile output file path'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l help -s h -d 'show help'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l version -s v -d 'print the version'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l help -s h -d 'show help'
-complete -c aqua -n __fish_aqua_no_subcommand -f -l version -s v -d 'print the version'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l log-level -r -d 'log level'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l config -s c -r -d 'configuration file path'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l disable-cosign -d 'Disable Cosign verification'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l disable-slsa -d 'Disable SLSA verification'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l disable-github-artifact-attestation -d 'Disable GitHub Artifact Attestations verification'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l trace -r -d 'trace output file path'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l cpu-profile -r -d 'cpu profile output file path'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l help -s h -d 'show help'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l version -s v -d 'print the version'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l help -s h -d 'show help'
+complete -c aqua -n '__fish_aqua_no_subcommand' -f -l version -s v -d 'print the version'
 complete -c aqua -n '__fish_seen_subcommand_from init' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a init -d 'Create a configuration file if it doesn\'t exist'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'init' -d 'Create a configuration file if it doesn\'t exist'
 complete -c aqua -n '__fish_seen_subcommand_from init' -f -l use-import-dir -s u -d 'Use import_dir'
-complete -c aqua -n '__fish_seen_subcommand_from init' -f -l import-dir -s i -r -d import_dir
+complete -c aqua -n '__fish_seen_subcommand_from init' -f -l import-dir -s i -r -d 'import_dir'
 complete -c aqua -n '__fish_seen_subcommand_from init' -f -l create-dir -s d -d 'Create a directory named aqua and create aqua.yaml in it'
 complete -c aqua -n '__fish_seen_subcommand_from install i' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a 'install i' -d 'Install tools'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'install i' -d 'Install tools'
 complete -c aqua -n '__fish_seen_subcommand_from install i' -f -l only-link -s l -d 'create links but skip downloading packages'
 complete -c aqua -n '__fish_seen_subcommand_from install i' -f -l test -d 'This flag was deprecated and had no meaning from aqua v2.0.0. This flag will be removed in aqua v3.0.0. https://github.com/aquaproj/aqua/issues/1691'
 complete -c aqua -n '__fish_seen_subcommand_from install i' -f -l all -s a -d 'install all aqua configuration packages'
 complete -c aqua -n '__fish_seen_subcommand_from install i' -f -l tags -s t -r -d 'filter installed packages with tags'
 complete -c aqua -n '__fish_seen_subcommand_from install i' -f -l exclude-tags -r -d 'exclude installed packages with tags'
 complete -c aqua -n '__fish_seen_subcommand_from generate g' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a 'generate g' -d 'Search packages in registries and output the configuration interactively'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'generate g' -d 'Search packages in registries and output the configuration interactively'
 complete -c aqua -n '__fish_seen_subcommand_from generate g' -f -l f -r -d 'the file path of packages list. When the value is "-", the list is passed from the standard input'
 complete -c aqua -n '__fish_seen_subcommand_from generate g' -f -l i -d 'Insert packages to configuration file'
 complete -c aqua -n '__fish_seen_subcommand_from generate g' -f -l pin -d 'Pin version'
@@ -43,14 +43,14 @@ complete -c aqua -n '__fish_seen_subcommand_from generate g' -f -l o -r -d 'inse
 complete -c aqua -n '__fish_seen_subcommand_from generate g' -f -l select-version -s s -d 'Select the installed version interactively. Default to display 30 versions, use --limit/-l to change it.'
 complete -c aqua -n '__fish_seen_subcommand_from generate g' -f -l limit -s l -r -d 'The maximum number of versions. Non-positive number refers to no limit.'
 complete -c aqua -n '__fish_seen_subcommand_from update-aqua upa' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a 'update-aqua upa' -d 'Update aqua'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'update-aqua upa' -d 'Update aqua'
 complete -c aqua -n '__fish_seen_subcommand_from update-checksum upc' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a 'update-checksum upc' -d 'Create or Update aqua-checksums.json'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'update-checksum upc' -d 'Create or Update aqua-checksums.json'
 complete -c aqua -n '__fish_seen_subcommand_from update-checksum upc' -f -l all -s a -d 'Create or Update all aqua-checksums.json including global configuration'
 complete -c aqua -n '__fish_seen_subcommand_from update-checksum upc' -f -l deep -d 'This flag was deprecated and had no meaning from aqua v2.0.0. This flag will be removed in aqua v3.0.0. https://github.com/aquaproj/aqua/issues/1769'
 complete -c aqua -n '__fish_seen_subcommand_from update-checksum upc' -f -l prune -d 'Remove unused checksums'
 complete -c aqua -n '__fish_seen_subcommand_from update up' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a 'update up' -d 'Update registries and packages'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'update up' -d 'Update registries and packages'
 complete -c aqua -n '__fish_seen_subcommand_from update up' -f -l i -d 'Select packages with fuzzy finder'
 complete -c aqua -n '__fish_seen_subcommand_from update up' -f -l select-version -s s -d 'Select the version with fuzzy finder. Default to display 30 versions, use --limit/-l to change it.'
 complete -c aqua -n '__fish_seen_subcommand_from update up' -f -l only-registry -s r -d 'Update only registries'
@@ -59,57 +59,57 @@ complete -c aqua -n '__fish_seen_subcommand_from update up' -f -l limit -s l -r
 complete -c aqua -n '__fish_seen_subcommand_from update up' -f -l tags -s t -r -d 'filter installed packages with tags'
 complete -c aqua -n '__fish_seen_subcommand_from update up' -f -l exclude-tags -r -d 'exclude installed packages with tags'
 complete -c aqua -n '__fish_seen_subcommand_from completion' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a completion -d 'Output shell completion script for bash, zsh, or fish'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'completion' -d 'Output shell completion script for bash, zsh, or fish'
 complete -c aqua -n '__fish_seen_subcommand_from completion' -f -l help -s h -d 'show help'
 complete -c aqua -n '__fish_seen_subcommand_from bash' -f -l help -s h -d 'show help'
-complete -r -c aqua -n '__fish_seen_subcommand_from completion' -a bash -d 'Output shell completion script for bash'
+complete -r -c aqua -n '__fish_seen_subcommand_from completion' -a 'bash' -d 'Output shell completion script for bash'
 complete -c aqua -n '__fish_seen_subcommand_from zsh' -f -l help -s h -d 'show help'
-complete -r -c aqua -n '__fish_seen_subcommand_from completion' -a zsh -d 'Output shell completion script for zsh'
+complete -r -c aqua -n '__fish_seen_subcommand_from completion' -a 'zsh' -d 'Output shell completion script for zsh'
 complete -c aqua -n '__fish_seen_subcommand_from fish' -f -l help -s h -d 'show help'
-complete -r -c aqua -n '__fish_seen_subcommand_from completion' -a fish -d 'Output shell completion script for fish'
+complete -r -c aqua -n '__fish_seen_subcommand_from completion' -a 'fish' -d 'Output shell completion script for fish'
 complete -c aqua -n '__fish_seen_subcommand_from fish' -f -l help -s h -d 'show help'
 complete -c aqua -n '__fish_seen_subcommand_from help h' -f -l help -s h -d 'show help'
 complete -r -c aqua -n '__fish_seen_subcommand_from fish' -a 'help h' -d 'Shows a list of commands or help for one command'
 complete -c aqua -n '__fish_seen_subcommand_from help h' -f -l help -s h -d 'show help'
 complete -r -c aqua -n '__fish_seen_subcommand_from completion' -a 'help h' -d 'Shows a list of commands or help for one command'
 complete -c aqua -n '__fish_seen_subcommand_from which' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a which -d 'Output the absolute file path of the given command'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'which' -d 'Output the absolute file path of the given command'
 complete -c aqua -n '__fish_seen_subcommand_from which' -f -l version -s v -d 'Output the given package version'
 complete -c aqua -n '__fish_seen_subcommand_from info' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a info -d 'Show information'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'info' -d 'Show information'
 complete -c aqua -n '__fish_seen_subcommand_from remove rm' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a 'remove rm' -d 'Uninstall packages'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'remove rm' -d 'Uninstall packages'
 complete -c aqua -n '__fish_seen_subcommand_from remove rm' -f -l all -s a -d 'uninstall all packages'
 complete -c aqua -n '__fish_seen_subcommand_from remove rm' -f -l mode -s m -r -d 'Removed target modes. l: link, p: package'
 complete -c aqua -n '__fish_seen_subcommand_from remove rm' -f -l i -d 'Select packages with a Fuzzy Finder'
 complete -c aqua -n '__fish_seen_subcommand_from vacuum' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a vacuum -d 'Remove unused installed packages'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'vacuum' -d 'Remove unused installed packages'
 complete -c aqua -n '__fish_seen_subcommand_from vacuum' -f -l init -d 'Create timestamp files.'
 complete -c aqua -n '__fish_seen_subcommand_from vacuum' -f -l days -s d -r -d 'Expiration days'
 complete -c aqua -n '__fish_seen_subcommand_from cp' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a cp -d 'Copy executable files in a directory'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'cp' -d 'Copy executable files in a directory'
 complete -c aqua -n '__fish_seen_subcommand_from cp' -f -l o -r -d 'destination directory'
 complete -c aqua -n '__fish_seen_subcommand_from cp' -f -l all -s a -d 'install all aqua configuration packages'
 complete -c aqua -n '__fish_seen_subcommand_from cp' -f -l tags -s t -r -d 'filter installed packages with tags'
 complete -c aqua -n '__fish_seen_subcommand_from cp' -f -l exclude-tags -r -d 'exclude installed packages with tags'
 complete -c aqua -n '__fish_seen_subcommand_from policy' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a policy -d 'Manage Policy'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'policy' -d 'Manage Policy'
 complete -c aqua -n '__fish_seen_subcommand_from allow' -f -l help -s h -d 'show help'
-complete -r -c aqua -n '__fish_seen_subcommand_from policy' -a allow -d 'Allow a policy file'
+complete -r -c aqua -n '__fish_seen_subcommand_from policy' -a 'allow' -d 'Allow a policy file'
 complete -c aqua -n '__fish_seen_subcommand_from deny' -f -l help -s h -d 'show help'
-complete -r -c aqua -n '__fish_seen_subcommand_from policy' -a deny -d 'Deny a policy file'
+complete -r -c aqua -n '__fish_seen_subcommand_from policy' -a 'deny' -d 'Deny a policy file'
 complete -c aqua -n '__fish_seen_subcommand_from init' -f -l help -s h -d 'show help'
-complete -r -c aqua -n '__fish_seen_subcommand_from policy' -a init -d 'Create a policy file if it doesn\'t exist'
+complete -r -c aqua -n '__fish_seen_subcommand_from policy' -a 'init' -d 'Create a policy file if it doesn\'t exist'
 complete -c aqua -n '__fish_seen_subcommand_from init-policy' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a init-policy -d '[Deprecated] Create a policy file if it doesn\'t exist'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'init-policy' -d '[Deprecated] Create a policy file if it doesn\'t exist'
 complete -c aqua -n '__fish_seen_subcommand_from exec' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a exec -d 'Execute tool'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'exec' -d 'Execute tool'
 complete -c aqua -n '__fish_seen_subcommand_from list' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a list -d 'List packages in Registries'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'list' -d 'List packages in Registries'
 complete -c aqua -n '__fish_seen_subcommand_from list' -f -l installed -s i -d 'List installed packages'
 complete -c aqua -n '__fish_seen_subcommand_from list' -f -l all -s a -d 'List global configuration packages too'
 complete -c aqua -n '__fish_seen_subcommand_from generate-registry gr' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a 'generate-registry gr' -d 'Generate a registry\'s package configuration'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'generate-registry gr' -d 'Generate a registry\'s package configuration'
 complete -c aqua -n '__fish_seen_subcommand_from generate-registry gr' -f -l out-testdata -r -d 'A file path where the testdata is outputted'
 complete -c aqua -n '__fish_seen_subcommand_from generate-registry gr' -f -l cmd -r -d 'A list of commands joined with commas \',\''
 complete -c aqua -n '__fish_seen_subcommand_from generate-registry gr' -f -l generate-config -s c -r -d 'A configuration file path'
@@ -117,8 +117,9 @@ complete -c aqua -n '__fish_seen_subcommand_from generate-registry gr' -f -l lim
 complete -c aqua -n '__fish_seen_subcommand_from generate-registry gr' -f -l deep -d 'This flag was deprecated and had no meaning from aqua v2.15.0. This flag will be removed in aqua v3.0.0. https://github.com/aquaproj/aqua/issues/2351'
 complete -c aqua -n '__fish_seen_subcommand_from generate-registry gr' -f -l init -d 'Generate a configuration file'
 complete -c aqua -n '__fish_seen_subcommand_from version' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a version -d 'Show version'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'version' -d 'Show version'
 complete -c aqua -n '__fish_seen_subcommand_from root-dir' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a root-dir -d 'Output the aqua root directory (AQUA_ROOT_DIR)'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'root-dir' -d 'Output the aqua root directory (AQUA_ROOT_DIR)'
 complete -c aqua -n '__fish_seen_subcommand_from help h' -f -l help -s h -d 'show help'
-complete -r -c aqua -n __fish_aqua_no_subcommand -a 'help h' -d 'Shows a list of commands or help for one command'
+complete -r -c aqua -n '__fish_aqua_no_subcommand' -a 'help h' -d 'Shows a list of commands or help for one command'
+